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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G529260
Reference: TK1151 Chr: Chr03 Coordinates: 133047415-133055173 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4374 bp · TkA03G529260|TK1151|cDNA

TTCCTTTATTTTCATTCTGGCGGGAACTCCTTTTTCATTCAGAAATAACTATACTACTATAGCACTCTGATTTCCTCTCTCACATACAGAGTTTTTCAAGAAATGCCGCCGAGGAAGAAAGCCGCCTCCGCCGCCGGAGGGTCGAAGAAATCAAACCAAAATCAACAACAGTCATCTGAAAAACCCTCCAAATTTGGCATTCAACATTTCTTCGAACGCCACACTCAAAACTCTCTCTCCCAAAACCCCCAAAAACCGCA...

CDS

Download CDS FASTA

4110 bp · TkA03G529260|TK1151|CDS

ATGCCGCCGAGGAAGAAAGCCGCCTCCGCCGCCGGAGGGTCGAAGAAATCAAACCAAAATCAACAACAGTCATCTGAAAAACCCTCCAAATTTGGCATTCAACATTTCTTCGAACGCCACACTCAAAACTCTCTCTCCCAAAACCCCCAAAAACCGCAGCCCGCCATCGCAAAAGCATCCTCAGTTGATGTCGGTTCGGATCCAGTAAGATTAAACCAACCGGTTGCCAGTACTATCGCTGGTTCTAGTTCCGATTCCGG...

Protein

Download Protein FASTA

1369 aa · TkA03G529260|TK1151|PROTEIN

MPPRKKAASAAGGSKKSNQNQQQSSEKPSKFGIQHFFERHTQNSLSQNPQKPQPAIAKASSVDVGSDPVRLNQPVASTIAGSSSDSGVNPRTELGPGNANKEDNKNPSQSTPVEDLISVGRGDANGNRLEVSPEFCKSLSRKRMKFSPGMLIDQSQDDGGDEVTWRISPVNERLHALTKNLVDARKVLGESSRINIMKFKQSSDNKFSPCSSFKLERVLSSPPMKATENSLKFIKGINLEKRNLEQDLISYGNNEKATDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G529260
TK1151 IDTkA03G529260
OH-1004 IDLXL04_010469
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G529260
LocationChr03:133047415-133055173 (-)
DescriptionSimilar to JHS1: DNA replication ATP-dependent helicase/nuclease JHS1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08840 Essential protein required during embryogenesis.
A DNA2 Homolog Is Required for DNA Damage Repair, Cell Cycle Regulation, and Meristem Maintenance in Plants.2016 · DOI: 10.1104/pp.16.00312

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010469 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000076 DNA replication checkpoint signaling Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0000729 DNA double-strand break processing Biological Process
GO:0006260 DNA replication Biological Process
GO:0006264 mitochondrial DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006284 base-excision repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0015880 coenzyme A transport Biological Process
GO:0032201 telomere maintenance via semi-conservative replication Biological Process
GO:0033567 DNA replication, Okazaki fragment processing Biological Process
KEGG gene cross-reference
ath:AT1G08840
gga:423688
mmu:327762
xla:378492
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.851
Rank 1 · TkA03G529260 · TK1151
Cytoplasm0.168
Rank 2 · TkA03G529260 · TK1151
Mitochondrion0.059
Rank 3 · TkA03G529260 · TK1151
Cell membrane0.023
Rank 4 · TkA03G529260 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA03G529260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13086AAA_11284-304 aa
PF08696Dna2387-589 aa
PF01930Cas_Cas4443-480 aa
PF12705PDDEXK_1445-706 aa
PF24883NPHP3_N464-483 aa
PF01930Cas_Cas4599-707 aa
PF24883NPHP3_N713-786 aa
PF04851ResIII943-1079 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G529260PF13086AAA_112843044.8e-35122.3
TkA03G529260PF08696Dna23875899.6e-60202.5
TkA03G529260PF01930Cas_Cas44434804.5e-0524.3
TkA03G529260PF12705PDDEXK_14457063.4e-0627.9
TkA03G529260PF24883NPHP3_N4644830.1712.8
TkA03G529260PF01930Cas_Cas45997074.5e-0524.3
TkA03G529260PF24883NPHP3_N7137860.1712.8
TkA03G529260PF04851ResIII94310790.01416.1
TkA03G529260PF13604AAA_3094411081.2e-0938.9
TkA03G529260PF13086AAA_1194510344.8e-35122.3
TkA03G529260PF00580UvrD-helicase94510109.3e-0626.2
TkA03G529260PF02562PhoH9479890.1112.7
TkA03G529260PF13245AAA_1994911084.1e-0834.2
TkA03G529260PF24883NPHP3_N9499910.1712.8
TkA03G529260PF20720nSTAND39519920.003617.7
TkA03G529260PF20030bpMoxR9549980.1212.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A0A1P8ASY1Arabidopsis thalianasp|A0A1P8ASY1|JHS1_ARATH DNA replication ATP-dependent helicase/nuclease JHS154.700%Swiss-ProtHigh

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