RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G528250
Reference: TK1151 Chr: Chr03 Coordinates: 132761959-132763464 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1239 bp · TkA03G528250|TK1151|cDNA

ATGGCTAGTGTTGATGATCAACACACGAATTTCAAGCATTTTTGTCGAATATGTAAGAAGGGTTTCATGTGTGGAAGAGCATTAGGCGGCCATATGAGAGCTCATGGCATTGGGGACGATACTGGGAATCTTGATGATGACGATCCGCCCAGCGATTGGGAAGCTAGTGGGTGGTCGAAAAGAAAACGATCTTTAAGGGCTAAAGTTGGCAGCTTTAATTCAATGTGTCCATCTAGCGAAGACGAAGACCTAGCCCTAGC...

CDS

Download CDS FASTA

1239 bp · TkA03G528250|TK1151|CDS

ATGGCTAGTGTTGATGATCAACACACGAATTTCAAGCATTTTTGTCGAATATGTAAGAAGGGTTTCATGTGTGGAAGAGCATTAGGCGGCCATATGAGAGCTCATGGCATTGGGGACGATACTGGGAATCTTGATGATGACGATCCGCCCAGCGATTGGGAAGCTAGTGGGTGGTCGAAAAGAAAACGATCTTTAAGGGCTAAAGTTGGCAGCTTTAATTCAATGTGTCCATCTAGCGAAGACGAAGACCTAGCCCTAGC...

Protein

Download Protein FASTA

412 aa · TkA03G528250|TK1151|PROTEIN

MASVDDQHTNFKHFCRICKKGFMCGRALGGHMRAHGIGDDTGNLDDDDPPSDWEASGWSKRKRSLRAKVGSFNSMCPSSEDEDLALAKCLMELSNARVDPVETDAEDSCASREEQRRNPVFTTAAFLSPFTRPPPPLDKAKGVATTPKGMFECKACKKVFNSHQALGGHRASHKKVKGCFAARNDQLDDTIVDDDVITHDQLFPSPKPISSYQVNQGPIGAARRKSKVHKCSICNRIFASGQALGGHKRCHWLTSNMSDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G528250
TK1151 IDTkA03G528250
OH-1004 IDLXL04_010455
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)78.600
Protein coverage (%)TK1151 96.602 / OH-1004 99.590
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G528250
LocationChr03:132761959-132763464 (+)
DescriptionSimilar to ZAT3: Zinc finger protein ZAT3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17180 Mediates the regulation of male germ cell division by DUO1.
An EAR-Dependent Regulatory Module Promotes Male Germ Cell Division and Sperm Fertility in Arabidopsis.2014 · DOI: 10.1105/tpc.114.124743
At4g35280 Mediates the regulation of male germ cell division by DUO1.
An EAR-Dependent Regulatory Module Promotes Male Germ Cell Division and Sperm Fertility in Arabidopsis.2014 · DOI: 10.1105/tpc.114.124743
At3g60580 Probable transcription factor that may be involved in stress responses. No verified direct reference in this release
At2g28200 Probable transcription factor that may be involved in stress responses. No verified direct reference in this release
At5g04340 Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis.
Phosphate homeostasis and root development in Arabidopsis are synchronized by the zinc finger transcription factor ZAT6.2007 · DOI: 10.1104/pp.107.101691

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010455 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009409 response to cold Biological Process
GO:0048235 pollen sperm cell differentiation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G17180
ath:AT2G28200
ath:AT2G45120
ath:AT3G60580
ath:AT4G35280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981
Rank 1 · TkA03G528250 · TK1151
Cytoplasm0.069
Rank 2 · TkA03G528250 · TK1151
Cell membrane0.025
Rank 3 · TkA03G528250 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA03G528250 · TK1151
Plastid0.010
Rank 5 · TkA03G528250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25420zf-C2H2_ZN2927-22 aa
PF02892zf-BED10-21 aa
PF12171zf-C2H2_jaz12-22 aa
PF13912zf-C2H2_613-35 aa
PF00096zf-C2H213-35 aa
PF13894zf-C2H2_414-35 aa
PF12874zf-met14-24 aa
PF29178Fs1Ya_N15-26 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G528250PF25420zf-C2H2_ZN2927220.0004121.0
TkA03G528250PF02892zf-BED10210.01316.2
TkA03G528250PF12171zf-C2H2_jaz12220.001219.7
TkA03G528250PF13912zf-C2H2_613351.3e-2383.1
TkA03G528250PF00096zf-C2H213356.98.1
TkA03G528250PF13894zf-C2H2_414356.1e-0936.5
TkA03G528250PF12874zf-met14241.5e-0629.0
TkA03G528250PF29178Fs1Ya_N15260.610.7
TkA03G528250PF23103Zf-C2H2_ZNF451_5th23320.113.1
TkA03G528250PF23455DUF71291451660.1812.3
TkA03G528250PF25420zf-C2H2_ZN2921471640.0004121.0
TkA03G528250PF02892zf-BED1481630.01316.2
TkA03G528250PF13912zf-C2H2_61511751.3e-2383.1
TkA03G528250PF13894zf-C2H2_41511736.1e-0936.5
TkA03G528250PF12874zf-met1511741.5e-0629.0
TkA03G528250PF12171zf-C2H2_jaz1511740.001219.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIJ0Arabidopsis thalianasp|Q9SIJ0|ZAT2_ARATH Zinc finger protein ZAT232.900%Swiss-ProtMedium
O65499Arabidopsis thalianasp|O65499|ZAT3_ARATH Zinc finger protein ZAT354.900%Swiss-ProtLow
Q9M202Arabidopsis thalianasp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT927.900%Swiss-ProtLow
Q681X4Arabidopsis thalianasp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT534.200%Swiss-ProtLow
O22533Arabidopsis thalianasp|O22533|ZAT6_ARATH Zinc finger protein ZAT629.600%Swiss-ProtLow

JBrowse

View in Genome Browser