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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G526040
Reference: TK1151 Chr: Chr03 Coordinates: 132066477-132070302 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1735 bp · TkA03G526040|TK1151|cDNA

AATATACTGAAACACTGGCCCTAGAAGCTTCCCGGGTTTGCAAATTATATTGATTCCTGCAATTAGGGTTTCTTTAGGGTTTACCATAACTCCCTTCATACACCAAAACAAAATACTTCGAAATTCAACTTAGTTTCCACAAATTTACAGACCACAAATGGTTCGTTCCAACGGCATTAAACTGTTCTCATGGATTGCTCGCCGGTCCCTCTCAAACGATCCCGTTTATGAGTCGCTTGCAAGAGGAGGTTATCGGAAGT...

CDS

Download CDS FASTA

1116 bp · TkA03G526040|TK1151|CDS

ATGGTTCGTTCCAACGGCATTAAACTGTTCTCATGGATTGCTCGCCGGTCCCTCTCAAACGATCCCGTTTATGAGTCGCTTGCAAGAGGAGGTTATCGGAAGTTTGGCTCATCAATTCACGGTCATTACAAGATTTCACCCTGCCGCAGTTACAAAAATGGAGTCAATTCGAGATATTGGTCAAATCTTGGAACGATTAAATCACATTATGGCAACAATAGATCGATTCATGGCACTTCACACATGGCTGCAAAGGATTA...

Protein

Download Protein FASTA

371 aa · TkA03G526040|TK1151|PROTEIN

MVRSNGIKLFSWIARRSLSNDPVYESLARGGYRKFGSSIHGHYKISPCRSYKNGVNSRYWSNLGTIKSHYGNNRSIHGTSHMAAKDYYDTLGVNKNATASEIKKAYYGLAKKWHPDANKDDPEAETKFQEVSKAYEVLKDEEKRAQYDQLGHETFEASASGGGGGPDAGHWRNPFQDLGDIFGFGPFARNFTGKDETGALELSFMEAVQGCTKSVVFQTELPCETCGGSGVPPGTKPETCRRCKGAGMVDFSQTGPFRIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G526040
TK1151 IDTkA03G526040
OH-1004 IDLXL04_010410
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.300
Protein coverage (%)TK1151 95.687 / OH-1004 80.272
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G526040
LocationChr03:132066477-132070302 (-)
DescriptionSimilar to GFA2: Chaperone protein dnaJ GFA2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g48030 Chaperone that may play a role in mitochondrial protein folding.
Mitochondrial GFA2 is required for synergid cell death in Arabidopsis.2002 · DOI: 10.1105/tpc.002170

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010410 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000740 nuclear membrane fusion Biological Process
GO:0006260 DNA replication Biological Process
GO:0006457 protein folding Biological Process
GO:0009408 response to heat Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009558 embryo sac cellularization Biological Process
GO:0010197 polar nucleus fusion Biological Process
GO:0010198 synergid death Biological Process
GO:0042026 protein refolding Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G48030
nma:NMA0209
nmc:NMC0043
nme:NMB0059
nmn:NMCC_0067
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.836
Rank 1 · TkA03G526040 · TK1151
Plastid0.156
Rank 2 · TkA03G526040 · TK1151
Cytoplasm0.063
Rank 3 · TkA03G526040 · TK1151
Nucleus0.037
Rank 4 · TkA03G526040 · TK1151
Extracellular0.030
Rank 5 · TkA03G526040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226DnaJ86-148 aa
PF25433DUF7895103-114 aa
PF01556DnaJ_C200-356 aa
PF28694SCO2_C208-231 aa
PF19114EsV_1_7_cys209-213 aa
PF18912DZR_2210-243 aa
PF15777Anti-TRAP220-249 aa
PF23733GRXCR1-2_C221-250 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G526040PF00226DnaJ861486.2e-2897.4
TkA03G526040PF25433DUF78951031143.78.7
TkA03G526040PF01556DnaJ_C2003565.2e-2072.8
TkA03G526040PF28694SCO2_C2082310.04514.5
TkA03G526040PF19114EsV_1_7_cys2092130.01515.9
TkA03G526040PF18912DZR_22102434.57.9
TkA03G526040PF15777Anti-TRAP2202490.007317.0
TkA03G526040PF23733GRXCR1-2_C2212500.04414.4
TkA03G526040PF20833RNase_E_G_Thio2222310.710.8
TkA03G526040PF25433DUF78952222493.78.7
TkA03G526040PF17302DUF53512222304.88.3
TkA03G526040PF00684DnaJ_CXXCXGXG2232833.6e-1350.3
TkA03G526040PF25436BSD2_CRD2232860.07114.0
TkA03G526040PF13717Zn_ribbon_42232270.113.3
TkA03G526040PF19114EsV_1_7_cys2302500.01515.9
TkA03G526040PF17302DUF53512382474.88.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GWW8Arabidopsis thalianasp|Q8GWW8|GFA2_ARATH Chaperone protein dnaJ GFA2, mitochondrial54.200%Swiss-ProtHigh

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