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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

TkA03G521240
Reference: TK1151 Chr: Chr03 Coordinates: 130792762-130793142 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

381 bp · TkA03G521240|TK1151|cDNA

ATGACCATTTTGACCGGAACCATCGTCGAGTACATGCGTCCAAGGGTGTTTTTCGCAGCGGCGGTGATCGGCGTCCTCACCGGCGTCGACGACTTTCTCTACGCCTGCGGAGTCTCCCGCCTCCCTGTCTCCACCACCTCCCTCATCATCGCGTCACACCTAGGATTCACCGCGTTCTTCGCGTTTCTGCTGGTGAAACAGAAATTCACGCCGTATTCGATCACGGCGTTGTATGGACTGATGTTGCCGATGGTGGAGAT...

381 bp · TkA03G521240|TK1151|CDS

ATGACCATTTTGACCGGAACCATCGTCGAGTACATGCGTCCAAGGGTGTTTTTCGCAGCGGCGGTGATCGGCGTCCTCACCGGCGTCGACGACTTTCTCTACGCCTGCGGAGTCTCCCGCCTCCCTGTCTCCACCACCTCCCTCATCATCGCGTCACACCTAGGATTCACCGCGTTCTTCGCGTTTCTGCTGGTGAAACAGAAATTCACGCCGTATTCGATCACGGCGTTGTATGGACTGATGTTGCCGATGGTGGAGAT...

126 aa · TkA03G521240|TK1151|PROTEIN

MTILTGTIVEYMRPRVFFAAAVIGVLTGVDDFLYACGVSRLPVSTTSLIIASHLGFTAFFAFLLVKQKFTPYSITALYGLMLPMVEMTYNKAKQTITYTLVTNSGQNGHMRTILKSSRVNGAQKKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G521240
TK1151 IDTkA03G521240
OH-1004 IDLXL04_010350
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 85.714 / OH-1004 80.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G521240
LocationChr03:130792762-130793142 (-)
DescriptionSimilar to PUP2: Purine permease 2
Arabidopsis / Rice Reference Genes and Papers
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010350 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006863 purine nucleobase transport Biological Process
GO:0010184 cytokinin transport Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0005345 purine nucleobase transmembrane transporter activity Molecular Function
GO:0015211 purine nucleoside transmembrane transporter activity Molecular Function
GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G28220
ath:AT1G28230
ath:AT2G33750
ath:AT4G18195
ath:AT4G18220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.292
Rank 1 · TkA03G521240 · TK1151
Endoplasmic reticulum0.249
Rank 2 · TkA03G521240 · TK1151
Lysosome / Vacuole0.232
Rank 3 · TkA03G521240 · TK1151
Golgi apparatus0.164
Rank 4 · TkA03G521240 · TK1151
Cytoplasm0.130
Rank 5 · TkA03G521240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01384PHO42-60 aa
PF16913PUNUT11-76 aa
PF00892EamA13-77 aa
PF30115PID2_N34-45 aa
PF16913PUNUT75-103 aa
PF30115PID2_N90-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G521240PF01384PHO42600.0413.7
TkA03G521240PF16913PUNUT11762.2e-2177.1
TkA03G521240PF00892EamA13772.5e-0525.3
TkA03G521240PF30115PID2_N34450.2212.2
TkA03G521240PF16913PUNUT751032.2e-2177.1
TkA03G521240PF30115PID2_N901200.2212.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZ96Arabidopsis thalianasp|Q9FZ96|PUP1_ARATH Purine permease 142.300%Swiss-ProtMedium
Q94GB1Arabidopsis thalianasp|Q94GB1|PUP2_ARATH Purine permease 240.900%Swiss-ProtMedium

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