RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G518200
Reference: TK1151 Chr: Chr03 Coordinates: 129971560-129975389 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2161 bp · TkA03G518200|TK1151|cDNA

TTAACCCTTTTGTTTTCGTCTTCCGAGTATTTTTTAACATCAAGAGAGGCGCTCTCCAAAAACCGTCCATTTACATCTCTATTTTTCCCACTCAGACCACACTCGGGATTCCCCTACTCAGATCAGTACCGACTGCTATCATCAGCAATGGCTGAAGCTTCCGACGATACAAGAGACATCGAAAAGCTCTATGAGTACGGTGAACGACTCAACGAAGCTAAAGACAAGTCTCAGAACGTGGACGACTATAAGAATATTAT...

CDS

Download CDS FASTA

1827 bp · TkA03G518200|TK1151|CDS

TTAACCCTTTTGTTTTCGTCTTCCGAGTATTTTTTAACATCAAGAGAGGCGCTCTCCAAAAACCGTCCATTTACATCTCTATTTTTCCCACTCAGACCACACTCGGGATTCCCCTACTCAGATCAGTACCGACTGCTATCATCAGCAATGGCTGAAGCTTCCGACGATACAAGAGACATCGAAAAGCTCTATGAGTACGGTGAACGACTCAACGAAGCTAAAGACAAGTCTCAGAACGTGGACGACTATAAGAATATTAT...

Protein

Download Protein FASTA

608 aa · TkA03G518200|TK1151|PROTEIN

LTLLFSSSEYFLTSREALSKNRPFTSLFFPLRPHSGFPYSDQYRLLSSAMAEASDDTRDIEKLYEYGERLNEAKDKSQNVDDYKNIIASATSTSLKARQLAAQLIPRFFKFFPGLSGTAVDAHLDLCEAEELGIRVQAIRGLPLFCKDTPEHISKIVDILAQLLIAEENVERDAVHKALLSLLRQDVKASLTALFKHIESVEEPIPDDNRERTLIFIRDKVFPIKSELLKPQEQMERLITDLIKKSLQDVTGAEFKMFMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G518200
TK1151 IDTkA03G518200
OH-1004 IDLXL04_010297
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 99.507 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G518200
LocationChr03:129971560-129975389 (+)
DescriptionSimilar to API5: Apoptosis inhibitor 5-like protein API5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0313400 Putative anti-apoptotic factor involved in the regulation of tapetal programmed cell death (PCD) and degeneration during anther development.
Rice APOPTOSIS INHIBITOR5 coupled with two DEAD-box adenosine 5'-triphosphate-dependent RNA helicases regulates tapetum degeneration.2011 · DOI: 10.1105/tpc.110.082636
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010297 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0043067 regulation of programmed cell death Biological Process
GO:0005634 nucleus Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0017134 fibroblast growth factor binding Molecular Function
KEGG gene cross-reference
dosa:Os02g0313400
hsa:8539
mmu:11800
pon:100173613
xla:446672
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.779
Rank 1 · TkA03G518200 · TK1151
Cytoplasm0.279
Rank 2 · TkA03G518200 · TK1151
Endoplasmic reticulum0.053
Rank 3 · TkA03G518200 · TK1151
Cell membrane0.046
Rank 4 · TkA03G518200 · TK1151
Golgi apparatus0.033
Rank 5 · TkA03G518200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30424DicA_C36-47 aa
PF10042DUF227845-73 aa
PF05918API560-604 aa
PF30424DicA_C70-83 aa
PF23271HEAT_GCN183-110 aa
PF22928INTS1_R489-146 aa
PF23271HEAT_GCN1121-201 aa
PF01602Adaptin_N127-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G518200PF30424DicA_C36470.2112.6
TkA03G518200PF10042DUF227845730.2412.0
TkA03G518200PF05918API5606047.7e-237788.2
TkA03G518200PF30424DicA_C70830.2112.6
TkA03G518200PF23271HEAT_GCN1831100.4111.4
TkA03G518200PF22928INTS1_R4891460.07313.7
TkA03G518200PF23271HEAT_GCN11212010.4111.4
TkA03G518200PF01602Adaptin_N1272920.01214.9
TkA03G518200PF06368Met_asp_mut_E1301980.04513.0
TkA03G518200PF24436INTS7_N1442130.04113.7
TkA03G518200PF22928INTS1_R41472000.07313.7
TkA03G518200PF10042DUF22781692540.2412.0
TkA03G518200PF30424DicA_C1761850.2112.6
TkA03G518200PF24436INTS7_N2223120.04113.7
TkA03G518200PF24436INTS7_N3294040.04113.7
TkA03G518200PF30424DicA_C3333560.2112.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6Z6S1Oryza sativa subsp. japonicasp|Q6Z6S1|API5_ORYSJ Apoptosis inhibitor 5-like protein API562.700%Swiss-ProtHigh

JBrowse

View in Genome Browser