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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G512400
Reference: TK1151 Chr: Chr03 Coordinates: 128545461-128550843 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

984 bp · TkA03G512400|TK1151|CDS

ATGGGGACGATTTATCCAGATGATGATTACGATTACTTGTTAGATGATGATGACGATTACTTGTTAGATGATGATTACGATTACTTGTTCAAGGGTATTCTACTCGGCGATTCAGGTGTCGGTAAAACCAATCTTTTGTCACGATTCTCCAAGAACAAATTCAACCTCGAATCCGAACGCACCATCGGGGTTGAATTCGCCACCGCTAGCATCAACGTTGATGACACGATCATCAAAGCTCAAATTTGGGACACCTCCGG...

Protein

Download Protein FASTA

327 aa · TkA03G512400|TK1151|PROTEIN

MGTIYPDDDYDYLLDDDDDYLLDDDYDYLFKGILLGDSGVGKTNLLSRFSKNKFNLESERTIGVEFATASINVDDTIIKAQIWDTSGQERYRTITNSYCQGSVGALLIYDITRKGTFENVERWLQELRNHIDQNIVIMLVGNKLDQRHLRVVTIDEAKAFAKRENINLFMETSALDGLNVYNAFAELLTQIYYAASKKDAKAFAHRKNINLFMETSALNISNVMNAFTKVVTQIKHVMCKKMADVNKVYDQMAMVEPKGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G512400
TK1151 IDTkA03G512400
OH-1004 IDLXL04_010223
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.100
Protein coverage (%)TK1151 85.627 / OH-1004 37.703
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G512400
LocationChr03:128545461-128550843 (+)
DescriptionSimilar to RAB11B: Ras-related protein Rab11B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g15060 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At5g60860 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g28550 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At5g45750 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010223 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0005768 endosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT3G15060
ath:AT5G60860
nta:107770722
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485
Rank 1 · TkA03G512400 · TK1151
Nucleus0.222
Rank 2 · TkA03G512400 · TK1151
Cell membrane0.157
Rank 3 · TkA03G512400 · TK1151
Lysosome / Vacuole0.130
Rank 4 · TkA03G512400 · TK1151
Endoplasmic reticulum0.100
Rank 5 · TkA03G512400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00071Ras31-192 aa
PF00025Arf31-190 aa
PF13401AAA_2232-170 aa
PF08477Roc33-145 aa
PF01926MMR_HSR133-140 aa
PF13238AAA_1833-137 aa
PF03193RsgA_GTPase33-52 aa
PF00009GTP_EFTU53-185 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G512400PF00071Ras311921.2e-60204.5
TkA03G512400PF00025Arf311905.2e-1039.8
TkA03G512400PF13401AAA_22321700.003518.4
TkA03G512400PF08477Roc331458.9e-32110.5
TkA03G512400PF01926MMR_HSR1331400.003518.2
TkA03G512400PF13238AAA_18331370.05614.7
TkA03G512400PF03193RsgA_GTPase33520.1212.9
TkA03G512400PF00009GTP_EFTU531858.2e-0523.0
TkA03G512400PF12445FliC71740.1113.6
TkA03G512400PF03193RsgA_GTPase1321500.1212.9
TkA03G512400PF11572DUF32341511880.08713.7
TkA03G512400PF13238AAA_181772170.05614.7
TkA03G512400PF11572DUF32341832360.08713.7
TkA03G512400PF00071Ras1962351.2e-60204.5
TkA03G512400PF03193RsgA_GTPase2843200.1212.9
TkA03G512400PF12445FliC2863160.1113.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LK99Arabidopsis thalianasp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g63.100%Swiss-ProtMedium
Q9FJH0Arabidopsis thalianasp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f62.600%Swiss-ProtMedium
Q9S810Arabidopsis thalianasp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i63.100%Swiss-ProtMedium
Q9FK68Arabidopsis thalianasp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c62.100%Swiss-ProtMedium

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