TkA03G498810 | RubberDandelionOmics

Gene overview

TkA03G498810

Reference: TK1151 Chr: Chr03 Coordinates: 125169693-125178371 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2122 bp · TkA03G498810|TK1151|cDNA

ATGCTCTTAGCTCAACCTGATTTCATTCACCTTTACTGCAACACTTCCAGTAACTTTACTTTAAACAGTGCATTCCAAAAAAACCTAAACACCACCCTCACCGCCCTCCCCGCCACCAACTCCGGCCTCGGTTTCTTCAACAGCTCCACAGGCGAAGGCGACGATGCAGCCAACGCAATTGCCCTCTGTCGAGGCGACATCAATCCAGATGTGTGCAGCAGTTGTCTGAATGACTCCATTATTAAGTTGCGGCTACTCTG...

CDS

Download CDS FASTA

1311 bp · TkA03G498810|TK1151|CDS

ATGCTCTTAGCTCAACCTGATTTCATTCACCTTTACTGCAACACTTCCAGTAACTTTACTTTAAACAGTGCATTCCAAAAAAACCTAAACACCACCCTCACCGCCCTCCCCGCCACCAACTCCGGCCTCGGTTTCTTCAACAGCTCCACAGGCGAAGGCGACGATGCAGCCAACGCAATTGCCCTCTGTCGAGGCGACATCAATCCAGATGTGTGCAGCAGTTGTCTGAATGACTCCATTATTAAGTTGCGGCTACTCTG...

Protein

Download Protein FASTA

436 aa · TkA03G498810|TK1151|PROTEIN

MLLAQPDFIHLYCNTSSNFTLNSAFQKNLNTTLTALPATNSGLGFFNSSTGEGDDAANAIALCRGDINPDVCSSCLNDSIIKLRLLCPNQKDAIGFYDYCYLRYHFVNLLRDTRVPFYKSYRASDNATNIEKFNTDLRRLLDDLKSRAASGGPLRKFASGNTTGPDFSTIYGLAQCTPVLSDLQCDSCLEDLFNQIGKLIGPKVGGRILVPMCNFRYERKRFYNVSSLPSPPIPPPRGNTFSFAGKKKIVSRTVIIIVLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G498810`
TK1151 ID	TkA03G498810
OH-1004 ID	LXL04_010108
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.300
Protein coverage (%)	TK1151 98.394 / OH-1004 58.370 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G498810

Location Chr03:125169693-125178371 (+)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g38830`	Cysteine-rich receptor-like protein kinase 26.	No verified direct reference in this release
`At4g23140`	Cysteine-rich receptor-like protein kinase 6.	No verified direct reference in this release
`At4g23150`	Cysteine-rich receptor-like protein kinase 7.	No verified direct reference in this release
`At4g23230`	Cysteine-rich receptor-like protein kinase 15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010108 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G38830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.859

Rank 1 · TkA03G498810 · TK1151

Endoplasmic reticulum0.075

Rank 2 · TkA03G498810 · TK1151

Cytoplasm0.064

Rank 3 · TkA03G498810 · TK1151

Nucleus0.031

Rank 4 · TkA03G498810 · TK1151

Extracellular0.029

Rank 5 · TkA03G498810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657Stress-antifung13-105 aa

PF01657Stress-antifung125-219 aa

PF05434Tmemb_9208-219 aa

PF16101PRIMA1227-285 aa

PF05568ASFV_J13L236-283 aa

PF05434Tmemb_9251-294 aa

PF19762DUF6249255-293 aa

PF06679DUF1180256-293 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G498810	`PF01657`	Stress-antifung	13	105	1.8e-36	125.5
TkA03G498810	`PF01657`	Stress-antifung	125	219	1.8e-36	125.5
TkA03G498810	`PF05434`	Tmemb_9	208	219	0.17	12.4
TkA03G498810	`PF16101`	PRIMA1	227	285	0.15	12.5
TkA03G498810	`PF05568`	ASFV_J13L	236	283	0.11	12.9
TkA03G498810	`PF05434`	Tmemb_9	251	294	0.17	12.4
TkA03G498810	`PF19762`	DUF6249	255	293	0.012	16.3
TkA03G498810	`PF06679`	DUF1180	256	293	0.35	12.0
TkA03G498810	`PF00069`	Pkinase	314	428	1.4e-16	61.5
TkA03G498810	`PF07714`	PK_Tyr_Ser-Thr	316	429	2.8e-18	66.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65468`	Arabidopsis thaliana	sp\|O65468\|CRK8_ARATH Cysteine-rich receptor-like protein kinase 8	39.900%	Swiss-Prot	Medium
`Q9T0J1`	Arabidopsis thaliana	sp\|Q9T0J1\|CRK26_ARATH Cysteine-rich receptor-like protein kinase 26	40.600%	Swiss-Prot	Medium
`Q9C5S9`	Arabidopsis thaliana	sp\|Q9C5S9\|CRK6_ARATH Cysteine-rich receptor-like protein kinase 6	42.100%	Swiss-Prot	Medium
`Q8L7G3`	Arabidopsis thaliana	sp\|Q8L7G3\|CRK7_ARATH Cysteine-rich receptor-like protein kinase 7	39.500%	Swiss-Prot	Medium
`Q8W4G6`	Arabidopsis thaliana	sp\|Q8W4G6\|CRK15_ARATH Cysteine-rich receptor-like protein kinase 15	39.500%	Swiss-Prot	Medium

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