LXL04_010108 | RubberDandelionOmics

Gene overview

LXL04_010108

Reference: OH-1004 Chr: Chr02 Coordinates: 140270597-140279038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2138 bp · LXL04_010108|LXL04_010108|OH1004|cDNA

ATGTCCATTCCCGCCGGAAAACTCCTCTCCTCTTTCATCTTCTTCTACTTTACCACTACCATCAGCTTAGCTCAACCTGATTTCATTCACCTTTACTGCAACACTTCCAGTAACTTTACTTTAAACAGTGCATTCCAAAAAAACCTAAACACCACCCTCACCGCCCTCCCCGCCACCAACTCCGGCCTCGGTTTCTTCAACAGCTCCACAGGCGAAGGCGACGATGCAGCCAACGCAATTGCCCTCTGTCGAGGCGACAT...

CDS

Download CDS FASTA

2064 bp · LXL04_010108|LXL04_010108|OH1004|CDS

ATGTCCATTCCCGCCGGAAAACTCCTCTCCTCTTTCATCTTCTTCTACTTTACCACTACCATCAGCTTAGCTCAACCTGATTTCATTCACCTTTACTGCAACACTTCCAGTAACTTTACTTTAAACAGTGCATTCCAAAAAAACCTAAACACCACCCTCACCGCCCTCCCCGCCACCAACTCCGGCCTCGGTTTCTTCAACAGCTCCACAGGCGAAGGCGACGATGCAGCCAACGCAATTGCCCTCTGTCGAGGCGACAT...

Protein

Download Protein FASTA

687 aa · LXL04_010108|LXL04_010108|OH1004|PROTEIN

MSIPAGKLLSSFIFFYFTTTISLAQPDFIHLYCNTSSNFTLNSAFQKNLNTTLTALPATNSGLGFFNSSTGEGDDAANAIALCRGDINPDDAIGFYDYCYLRYHFVNLLRDTRVPFYKSYRASDNATNIEKFNTDLRRLLDDLKSRAASGGPLRKFASGNTTGPDFSTIYGLAQCTPVLSDLQCDSCLEDLFNQIGKLIGPKVGGRILVPMCNFRYEIKRFYNVSSLPSPPIPPPRGKKKIVSRTVIIIVLAIVVGSVII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010108`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010108

Location Chr02:140270597-140279038 (+)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g38830`	Cysteine-rich receptor-like protein kinase 26.	No verified direct reference in this release
`At4g21410`	Cysteine-rich receptor-like protein kinase 29.	No verified direct reference in this release
`At4g23230`	Cysteine-rich receptor-like protein kinase 15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010108 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G38830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.848

Rank 1 · LXL04_010108 · OH-1004

Endoplasmic reticulum0.089

Rank 2 · LXL04_010108 · OH-1004

Cytoplasm0.078

Rank 3 · LXL04_010108 · OH-1004

Nucleus0.052

Rank 4 · LXL04_010108 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_010108 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung33-90 aa

PF01657.23Stress-antifung124-217 aa

PF00069.32Pkinase306-471 aa

PF07714.24PK_Tyr_Ser-Thr308-462 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010108	`PF01657.23`	Stress-antifung	33	90	2e-22	80.4
LXL04_010108	`PF01657.23`	Stress-antifung	124	217	2e-22	80.4
LXL04_010108	`PF00069.32`	Pkinase	306	471	4.7e-31	108.9
LXL04_010108	`PF07714.24`	PK_Tyr_Ser-Thr	308	462	3.3e-30	106.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	39.645%	Swiss-Prot	moderate database homology
`O65468`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 8	40.984%	Swiss-Prot	moderate database homology
`Q9T0J1`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 26	42.276%	Swiss-Prot	moderate database homology
`Q8S9L6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 29	40.571%	Swiss-Prot	moderate database homology
`Q8W4G6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 15	41.189%	Swiss-Prot	moderate database homology

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