TkA03G488450 | RubberDandelionOmics

Gene overview

TkA03G488450

Reference: TK1151 Chr: Chr03 Coordinates: 122251138-122255068 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1708 bp · TkA03G488450|TK1151|cDNA

CATGACTCTAAACTACAAAAATACACCACCTCGATTTGATCGTTCCTACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGTCGCCAGTAATGGCAGTGGCAGTGCAAGGAAAGGGGGAGTGAGTTCTCATTGGGAAGGTAAAGCCCTCCCCTTTGCACCATTTTTTTCTTTCACAAACGTCTCTACACTCTACTATACACCCCCAGAATACGCTCTCTACACACTACAAACAAGATAAACATCACATTACCATT...

CDS

Download CDS FASTA

1107 bp · TkA03G488450|TK1151|CDS

ATGGACGGTGGTGGTTCTGTAGGTACATCATGTTTAATGGGGTTCGGAGATAACAACAACATCAATCAAAGCGGCAGTGGTAGTAATAATAACAACAGCATTGGATCCCTCTGTGCTCCTCCACCTCCTGTTATATACGGCAATTCTGTAATTTTTCCCACTCAGGATCATCATCATCATCAAAGCAACTGTGGTTCTTCAGCTATGATTCTCGAAGGCAACAATAGCAACATTAACGATGGAGGAAGCTTAGGGTTCAT...

Protein

Download Protein FASTA

368 aa · TkA03G488450|TK1151|PROTEIN

MDGGGSVGTSCLMGFGDNNNINQSGSGSNNNNSIGSLCAPPPPVIYGNSVIFPTQDHHHHQSNCGSSAMILEGNNSNINDGGSLGFISSSSCSSSVKAKIMSHPHYPRLLSAYLNCQKIGAPPEVVERLEESCRASVMAAMSASSGYGGGCAGSTSGGGTGTTTVGQDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLSRIESQFKAISFSPSDSGCGEGGMDRNGSSEEDLDVDVNNNNMVDPQAEESELKGQLLRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G488450`
TK1151 ID	TkA03G488450
OH-1004 ID	LXL04_009990
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G488450

Location Chr03:122251138-122255068 (-)

Description Similar to H1: Homeobox protein SBH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62360`	Required for shoot apical meristem (SAM) formation during embryogenesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009990 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009691 cytokinin biosynthetic process Biological Process

GO:0009888 tissue development Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0010582 floral meristem determinacy Biological Process

GO:0019827 stem cell population maintenance Biological Process

GO:0048440 carpel development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

KEGG gene cross-reference

ath:AT1G62360

dosa:Os07g0129700

gmx:547796

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.979

Rank 1 · TkA03G488450 · TK1151

Cytoplasm0.085

Rank 2 · TkA03G488450 · TK1151

Cell membrane0.023

Rank 3 · TkA03G488450 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA03G488450 · TK1151

Plastid0.010

Rank 5 · TkA03G488450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03790KNOX196-135 aa

PF13565HTH_32122-129 aa

PF03791KNOX2165-210 aa

PF03789ELK252-273 aa

PF00046Homeodomain267-289 aa

PF13565HTH_32267-321 aa

PF05920Homeobox_KN292-331 aa

PF00046Homeodomain299-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G488450	`PF03790`	KNOX1	96	135	3.8e-22	78.5
TkA03G488450	`PF13565`	HTH_32	122	129	0.11	13.8
TkA03G488450	`PF03791`	KNOX2	165	210	6e-22	77.6
TkA03G488450	`PF03789`	ELK	252	273	2.5e-11	43.9
TkA03G488450	`PF00046`	Homeodomain	267	289	6.2e-07	29.9
TkA03G488450	`PF13565`	HTH_32	267	321	0.11	13.8
TkA03G488450	`PF05920`	Homeobox_KN	292	331	1e-18	67.6
TkA03G488450	`PF00046`	Homeodomain	299	332	6.2e-07	29.9
TkA03G488450	`PF23739`	HTH_72	309	339	0.039	14.6
TkA03G488450	`PF03790`	KNOX1	346	351	3.8e-22	78.5
TkA03G488450	`PF05920`	Homeobox_KN	358	363	1e-18	67.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38874`	Arabidopsis thaliana	sp\|Q38874\|STM_ARATH Homeobox protein SHOOT MERISTEMLESS	70.300%	Swiss-Prot	High

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