TkA03G462790 | RubberDandelionOmics

Gene overview

TkA03G462790

Reference: TK1151 Chr: Chr03 Coordinates: 115525400-115528245 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2079 bp · TkA03G462790|TK1151|cDNA

AATGTTGTAATCCTCTAACAAATAAGATAGTAAGATAATCCACAGATTTGTCATACCCTCGATATGTTAAACTTATACAAGAGGGGTACAAATTAAGGCGTCCTTATCTGGTATTCAGTATTGAGTATTGACACGAGAAAACAGTTAATCGAAAGTCACGAATTATTAGGCGCGGCACACAGAGGCCTCCATGTTTCCTTCTACTTCTAGGATGACGAAGAAAAGAGACCGAGCGAGCATTGATACGGCAGTCTTCGATA...

CDS

Download CDS FASTA

1551 bp · TkA03G462790|TK1151|CDS

ATGTTTCCTTCTACTTCTAGGATGACGAAGAAAAGAGACCGAGCGAGCATTGATACGGCAGTCTTCGATATCTGCCGCCGTGAGGTCGGCCATCTTTCAACCCGAAAATTCGTCAACCGGCTCGCCGCTTCAGAGGATCTAGTCCTGAGACTTGCTCTTTCGAGGAAGCTAGAAAAACACAGAGGATGTGTCAACACAGTGAGCTTCAATGATAATGGAGATATACTTGTATCTGGATCAGATGACAGAAGAGTTATACT...

Protein

Download Protein FASTA

516 aa · TkA03G462790|TK1151|PROTEIN

MFPSTSRMTKKRDRASIDTAVFDICRREVGHLSTRKFVNRLAASEDLVLRLALSRKLEKHRGCVNTVSFNDNGDILVSGSDDRRVILWDWETGNVKLAFHSGHNNNIFQAKIMPGTDDRSIVTCAADGQVRHAMIPENGEIETKLLGKHHGRAHKLANEPGSPHIFYTCGEDGLVQHFDLRTGIATELFSCQPISDRSFTGIINLNSIAIDPRNPNLFAIAGSDEFTRVYDIRQYKWDGSTPFGKPTNYFCPHHLINDEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G462790`
TK1151 ID	TkA03G462790
OH-1004 ID	LXL04_009691
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.100
Protein coverage (%)	TK1151 89.729 / OH-1004 86.372 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G462790`
Location	Chr03:115525400-115528245 (+)
Description	Similar to DCAF8: DDB1- and CUL4-associated factor 8
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009691` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007283 spermatogenesis Biological Process GO:0007338 single fertilization Biological Process GO:0016567 protein ubiquitination Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component
KEGG gene cross-reference	hsa:347442 hsa:50717 mmu:98193 rno:364050 xla:431952 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.740

Rank 1 · TkA03G462790 · TK1151

Cytoplasm0.324

Rank 2 · TkA03G462790 · TK1151

Mitochondrion0.030

Rank 3 · TkA03G462790 · TK1151

Cell membrane0.028

Rank 4 · TkA03G462790 · TK1151

Lysosome / Vacuole0.022

Rank 5 · TkA03G462790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23383Beta-prop_IFT140_1st43-93 aa

PF24105Beta-prop_CAF1B_HIR144-101 aa

PF24817WD40_WDHD1_1st44-100 aa

PF25047Beta-prop_TEP1_2nd50-180 aa

PF24797Beta-prop_WDR35_TULP_N50-94 aa

PF23410Beta-prop_VPS851-105 aa

PF25175Beta-prop_WDR552-187 aa

PF25391WD40_Gbeta52-194 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G462790	`PF23383`	Beta-prop_IFT140_1st	43	93	0.035	13.5
TkA03G462790	`PF24105`	Beta-prop_CAF1B_HIR1	44	101	5e-11	42.9
TkA03G462790	`PF24817`	WD40_WDHD1_1st	44	100	6.2e-11	42.7
TkA03G462790	`PF25047`	Beta-prop_TEP1_2nd	50	180	9.4e-10	38.8
TkA03G462790	`PF24797`	Beta-prop_WDR35_TULP_N	50	94	0.33	10.8
TkA03G462790	`PF23410`	Beta-prop_VPS8	51	105	0.012	15.4
TkA03G462790	`PF25175`	Beta-prop_WDR5	52	187	6.7e-31	108.4
TkA03G462790	`PF25391`	WD40_Gbeta	52	194	2.5e-08	34.0
TkA03G462790	`PF23381`	Beta-prop_IFT122_1st	53	132	1.2e-20	74.7
TkA03G462790	`PF23609`	Beta-prop_EIPR1	54	88	1.4e-05	25.5
TkA03G462790	`PF25168`	Beta-prop_WDR36-Utp21_2nd	54	94	0.00086	19.4
TkA03G462790	`PF23775`	Beta-prop_RIG_2nd	54	124	0.0037	17.4
TkA03G462790	`PF23756`	Beta-prop_HPS5	54	92	0.0086	16.1
TkA03G462790	`PF30552`	CFAP251_N	54	100	0.1	12.5
TkA03G462790	`PF00400`	WD40	55	89	1.2e-26	92.7
TkA03G462790	`PF25173`	Beta-prop_WDR3_1st	55	143	1.2e-19	71.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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