TkA03G448450 | RubberDandelionOmics

Gene overview

TkA03G448450

Reference: TK1151 Chr: Chr03 Coordinates: 111892332-111894751 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1178 bp · TkA03G448450|TK1151|cDNA

CTTGCTTTTCCAATAAATTTCATTCCATCTTCTCCAATAAATCGTTGTTTGTCATCTCCCCTTTTTATTTGCGGATGTTTTGCATTATTTGATATCTGCAATTTGATCATCTCTTTCACTACCATTTTTGTTTTGTGTTTTTCTTGATTGCTGCTTGAAAGACAATAACATGGATCACGAGCATCTACGAACTCTCGTAGGAGTACTCGGGAACATCATTTCCGGAATTCTCTTTCTCTCCCCTATCCCAACATTTATGA...

CDS

Download CDS FASTA

699 bp · TkA03G448450|TK1151|CDS

ATGGATCACGAGCATCTACGAACTCTCGTAGGAGTACTCGGGAACATCATTTCCGGAATTCTCTTTCTCTCCCCTATCCCAACATTTATGAGAATTGTCAAGGCAAAATCAGTTCAAGCCTTCAAGCCAGATCCATATGTTGCCACCCTTCTCAATTGTTCCATGTGGATGTTCTATGGTCTCCCAGTTGTCCATCCAGATAGTCTTTTGATCATCACAATCAATGGTGCTGGATTCGCCATTGAAGCTGTCTTCATCAC...

Protein

Download Protein FASTA

232 aa · TkA03G448450|TK1151|PROTEIN

MDHEHLRTLVGVLGNIISGILFLSPIPTFMRIVKAKSVQAFKPDPYVATLLNCSMWMFYGLPVVHPDSLLIITINGAGFAIEAVFITIFFMYSTWGGRKKILIALVFEVVFVTGVVVVTLMCFHTYASRSMIVGLICIVFNILMYASPLTVMKMVIKTKSVKYMPFTLALASFANSVVWCVYALLQFDPYILVPNALGSISAIIQLVLYATYYSTTNWDDDDEIQMSGSSKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G448450`
TK1151 ID	TkA03G448450
OH-1004 ID	LXL04_009558
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G448450

Location Chr03:111892332-111894751 (-)

Description Similar to SWEET5: Bidirectional sugar transporter SWEET5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62850`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane (By similarity).	No verified direct reference in this release
`At3g28007`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YZ24`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os09g0258700`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os09g0259200`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009558 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G62850

dosa:Os01g0605700

dosa:Os09g0258700

dosa:Os09g0259200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.658

Rank 1 · TkA03G448450 · TK1151

Lysosome / Vacuole0.134

Rank 2 · TkA03G448450 · TK1151

Endoplasmic reticulum0.108

Rank 3 · TkA03G448450 · TK1151

Cytoplasm0.107

Rank 4 · TkA03G448450 · TK1151

Golgi apparatus0.066

Rank 5 · TkA03G448450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083MtN3_slv9-93 aa

PF04193PQ-loop11-60 aa

PF15099PIRT98-149 aa

PF16311TMEM100107-165 aa

PF03083MtN3_slv117-117 aa

PF03083MtN3_slv132-215 aa

PF04193PQ-loop133-144 aa

PF04193PQ-loop156-189 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G448450	`PF03083`	MtN3_slv	9	93	8e-43	145.1
TkA03G448450	`PF04193`	PQ-loop	11	60	0.073	13.6
TkA03G448450	`PF15099`	PIRT	98	149	6.6	7.2
TkA03G448450	`PF16311`	TMEM100	107	165	2.7	8.3
TkA03G448450	`PF03083`	MtN3_slv	117	117	8e-43	145.1
TkA03G448450	`PF03083`	MtN3_slv	132	215	8e-43	145.1
TkA03G448450	`PF04193`	PQ-loop	133	144	0.073	13.6
TkA03G448450	`PF04193`	PQ-loop	156	189	0.073	13.6
TkA03G448450	`PF04193`	PQ-loop	195	209	0.073	13.6
TkA03G448450	`PF16311`	TMEM100	195	210	2.7	8.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FM10`	Arabidopsis thaliana	sp\|Q9FM10\|SWET5_ARATH Bidirectional sugar transporter SWEET5	63.100%	Swiss-Prot	High
`Q944M5`	Arabidopsis thaliana	sp\|Q944M5\|SWET4_ARATH Bidirectional sugar transporter SWEET4	54.900%	Swiss-Prot	High
`A2YZ24`	Oryza sativa subsp. indica	sp\|A2YZ24\|SWT7B_ORYSI Bidirectional sugar transporter SWEET7b	52.500%	Swiss-Prot	High
`Q0J349`	Oryza sativa subsp. japonica	sp\|Q0J349\|SWT7B_ORYSJ Bidirectional sugar transporter SWEET7b	52.000%	Swiss-Prot	High
`B9G2E6`	Oryza sativa subsp. japonica	sp\|B9G2E6\|SWT7D_ORYSJ Putative bidirectional sugar transporter SWEET7d	52.300%	Swiss-Prot	High

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