LXL04_009558 | RubberDandelionOmics

Gene overview

LXL04_009558

Reference: OH-1004 Chr: Chr02 Coordinates: 128962011-128963960 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

699 bp · LXL04_009558|LXL04_009558|OH1004|cDNA

ATGGATCACGAGCATCTACGAACTCTCGTAGGAGTACTCGGGAACATCATTTCCGGAATTCTCTTTCTCTCCCCTATCCCAACATTTATGAGAATTGTCAAGGCAAAATCAGTTCAAGCCTTCAAGCCAGATCCATATGTTGCCACCCTTCTCAATTGTTCCATGTGGATGTTCTATGGTCTCCCAGTTGTCCATCCAGATAGTCTTTTGATCATCACAATCAATGGTGCTGGATTCGCCATTGAAGCTGTCTTCATCAC...

CDS

Download CDS FASTA

699 bp · LXL04_009558|LXL04_009558|OH1004|CDS

ATGGATCACGAGCATCTACGAACTCTCGTAGGAGTACTCGGGAACATCATTTCCGGAATTCTCTTTCTCTCCCCTATCCCAACATTTATGAGAATTGTCAAGGCAAAATCAGTTCAAGCCTTCAAGCCAGATCCATATGTTGCCACCCTTCTCAATTGTTCCATGTGGATGTTCTATGGTCTCCCAGTTGTCCATCCAGATAGTCTTTTGATCATCACAATCAATGGTGCTGGATTCGCCATTGAAGCTGTCTTCATCAC...

Protein

Download Protein FASTA

232 aa · LXL04_009558|LXL04_009558|OH1004|PROTEIN

MDHEHLRTLVGVLGNIISGILFLSPIPTFMRIVKAKSVQAFKPDPYVATLLNCSMWMFYGLPVVHPDSLLIITINGAGFAIEAVFITIFFMYSTWGGRKKILIALVFEVVFVTGVVVVTLMCFHTYASRSMIVGLICIVFNILMYASPLTVMKMVIKTKSVKYMPFTLALASFANSVVWCVYALLQFDPYILVPNALGSISAIIQLVLYATYYSTTNWDDDDEIQMSGSSKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009558`
TK1151 ID	TkA03G448450
OH-1004 ID	LXL04_009558
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009558

Location Chr02:128962011-128963960 (-)

Description Similar to SWEET5: Bidirectional sugar transporter SWEET5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62850`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YZ24`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os09g0258700`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os09g0259200`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os01g0605700`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009558 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G62850

dosa:Os01g0605700

dosa:Os09g0258700

dosa:Os09g0259200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.658

Rank 1 · LXL04_009558 · OH-1004

Lysosome / Vacuole0.134

Rank 2 · LXL04_009558 · OH-1004

Endoplasmic reticulum0.108

Rank 3 · LXL04_009558 · OH-1004

Cytoplasm0.107

Rank 4 · LXL04_009558 · OH-1004

Golgi apparatus0.066

Rank 5 · LXL04_009558 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083.22MtN3_slv9-93 aa

PF03083.22MtN3_slv132-215 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009558	`PF03083.22`	MtN3_slv	9	93	8e-43	145.1
LXL04_009558	`PF03083.22`	MtN3_slv	132	215	8e-43	145.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FM10`	Arabidopsis thaliana	Bidirectional sugar transporter SWEET5	63.063%	Swiss-Prot	strong database homology
`A2YZ24`	Oryza sativa subsp. indica	Bidirectional sugar transporter SWEET7b	52.489%	Swiss-Prot	strong database homology
`Q0J349`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET7b	51.570%	Swiss-Prot	strong database homology
`B9G2E6`	Oryza sativa subsp. japonica	Putative bidirectional sugar transporter SWEET7d	53.081%	Swiss-Prot	strong database homology
`Q8W0K2`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET6b	54.762%	Swiss-Prot	strong database homology

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