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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G441230
Reference: TK1151 Chr: Chr03 Coordinates: 109948053-109952027 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1698 bp · TkA03G441230|TK1151|cDNA

AGCTTCAACCGAAAAGAAAAGTGAAAAAGAAAAATGAAAATGTCGAGTTCAGTTGTAGCGTACAGCTTCCGCCATATCCCACCTTTAAAGCAGCGCTCAATCCAGTACTTCTCTCATCAACGTCTTCTCCGCCGTCGTCCGCTCCGCTCACCGTGCACCGTTCCCGTCGCTACCTCTACATCGTCTTGCAGTCTTCTAAATTCTGCGTCTTTCACGGGCAATTCATTGTTTCGTAGGATGGAGCGATACTGGGCGGCAAG...

CDS

Download CDS FASTA

930 bp · TkA03G441230|TK1151|CDS

ATGAAAATGTCGAGTTCAGTTGTAGCGTACAGCTTCCGCCATATCCCACCTTTAAAGCAGCGCTCAATCCAGTACTTCTCTCATCAACGTCTTCTCCGCCGTCGTCCGCTCCGCTCACCGTGCACCGTTCCCGTCGCTACCTCTACATCGTCTTGCAGTCTTCTAAATTCTGCGTCTTTCACGGGCAATTCATTGTTTCGTAGGATGGAGCGATACTGGGCGGCAAGTAGCGTGAACAAGAATCAAGGCATGGTGGAGCA...

Protein

Download Protein FASTA

310 aa · TkA03G441230|TK1151|PROTEIN

MKMSSSVVAYSFRHIPPLKQRSIQYFSHQRLLRRRPLRSPCTVPVATSTSSCSLLNSASFTGNSLFRRMERYWAASSVNKNQGMVEHLQRYGVIHSKKVAEVMQTIDRALFVPDGFSAYEDSPMQIGFNATISAPHMHATCLQLLEKNLQPGMHALDVGSGTGYLTACFALMVGPQGRAVGVDHIPELVTTSITNIEKSAAGQLLKDGSLALHVADGREGWVEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRLVIPVGNV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G441230
TK1151 IDTkA03G441230
OH-1004 IDLXL04_009476
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 93.093
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G441230
LocationChr03:109948053-109952027 (+)
DescriptionSimilar to PIMT1: Protein-L-isoaspartate O-methyltransferase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g48330 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues.
A second protein L-isoaspartyl methyltransferase gene in Arabidopsis produces two transcripts whose products are sequestered in the nucleus.2004 · DOI: 10.1104/pp.104.046094
Protein repair L-isoaspartyl methyltransferase 1 is involved in both seed longevity and germination vigor in Arabidopsis.2008 · DOI: 10.1105/tpc.108.058479
Arabidopsis Protein Repair L-Isoaspartyl Methyltransferases: Predominant Activities at Lethal Temperatures.2006 · DOI: 10.1111/j.1399-3054.2006.00772.x
At5g50240 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues.
A second protein L-isoaspartyl methyltransferase gene in Arabidopsis produces two transcripts whose products are sequestered in the nucleus.2004 · DOI: 10.1104/pp.104.046094
Arabidopsis Protein Repair L-Isoaspartyl Methyltransferases: Predominant Activities at Lethal Temperatures.2006 · DOI: 10.1111/j.1399-3054.2006.00772.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009476 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006479 protein methylation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009845 seed germination Biological Process
GO:0030091 protein repair Biological Process
GO:0032259 methylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G48330
ath:AT5G50240
gga:428607
ssc:100502562
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.630
Rank 1 · TkA03G441230 · TK1151
Mitochondrion0.215
Rank 2 · TkA03G441230 · TK1151
Cytoplasm0.176
Rank 3 · TkA03G441230 · TK1151
Peroxisome0.091
Rank 4 · TkA03G441230 · TK1151
Nucleus0.084
Rank 5 · TkA03G441230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01135PCMT80-289 aa
PF10294Methyltransf_16136-199 aa
PF30636Methyltransf_37139-257 aa
PF13679Methyltransf_32139-199 aa
PF06325PrmA140-199 aa
PF13489Methyltransf_23142-232 aa
PF05175MTS144-255 aa
PF02353CMAS145-166 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G441230PF01135PCMT802895.1e-81272.2
TkA03G441230PF10294Methyltransf_161361990.2311.9
TkA03G441230PF30636Methyltransf_371392570.0002421.9
TkA03G441230PF13679Methyltransf_321391990.02915.1
TkA03G441230PF06325PrmA1401996e-0523.4
TkA03G441230PF13489Methyltransf_231422320.04614.1
TkA03G441230PF05175MTS1442550.02814.7
TkA03G441230PF02353CMAS1451660.2611.3
TkA03G441230PF01728FtsJ1462190.002718.4
TkA03G441230PF01209Ubie_methyltran1492000.07213.1
TkA03G441230PF13847Methyltransf_311502021.4e-0732.1
TkA03G441230PF13649Methyltransf_251562330.0003322.0
TkA03G441230PF08241Methyltransf_111562100.02715.8
TkA03G441230PF08242Methyltransf_121562310.1613.4
TkA03G441230PF29244Methyltransf_ANTKMT1572000.2712.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q42539Arabidopsis thalianasp|Q42539|PIMT1_ARATH Protein-L-isoaspartate O-methyltransferase 172.500%Swiss-ProtHigh
Q64J17Arabidopsis thalianasp|Q64J17|PIMT2_ARATH Protein-L-isoaspartate O-methyltransferase 270.500%Swiss-ProtHigh

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