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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G440820
Reference: TK1151 Chr: Chr03 Coordinates: 109836333-109838853 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1960 bp · TkA03G440820|TK1151|cDNA

TTATTTTCGAAAAATTGATTAATTCTGGAAAATTTCCCTTTCCTGATCAGCCATGCTTTGGATTTCTTGAGACGAACCTTTAGATCATGATGGGGATTGGCCCAAACAGTTAACCGTTTGAATCATTCATCTTTTCAGACTCTTCCGTTTGTTACGTGCCCTTTTTAGACCTCCTCTGCTCGAAGAACCTCAAGGGCTTTGTCGTTACAATGGCTTTTCGAACCGATAGCCGGACGGCTACACTATTCATTATCGACGAA...

CDS

Download CDS FASTA

1533 bp · TkA03G440820|TK1151|CDS

ATGGCTGAGGACGAAATTGGGATAAACGCAATAAAGCATGCCATGAGAGCTCTTAGAAAGCGTCATCTAGCAGAAGAGGGAGCTCATGGGCCTGCTTTTACAGCTATTTCAAAACCTATTGCTTCTCAGGGTATGGTCTGGAAAGAAAAGGCAGAAACTCTTGAATTGGAACTTCAACAATGCTACAAAGCTCAAGCTCGATTATCCGAACAACTTGTTGTAGAAGTTGCAGAATCCAGAGCTTCGAAAGCTTTAGTTCA...

Protein

Download Protein FASTA

510 aa · TkA03G440820|TK1151|PROTEIN

MAEDEIGINAIKHAMRALRKRHLAEEGAHGPAFTAISKPIASQGMVWKEKAETLELELQQCYKAQARLSEQLVVEVAESRASKALVQEKEALIPTLENELSQIRDECSRLTSLLEEKTKAINLLIDENHDLKIQNEDIRAKANNVESENKTLIDRWKAEKLKDSERLNEVNALYEDILNKLKANGLQKLASQQIDGIVRQTEQGAEHYTESTVPKTCTHRITAHQGGCASVIFEPTSRKLITGGQDQTVKTWDTDTATLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G440820
TK1151 IDTkA03G440820
OH-1004 IDLXL04_009466
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)82.900
Protein coverage (%)TK1151 14.902 / OH-1004 76.768
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G440820
LocationChr03:109836333-109838853 (-)
DescriptionSimilar to ATG16: Autophagy-related protein 16
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g50230 May play a role in autophagy. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009466 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000045 autophagosome assembly Biological Process
GO:0015031 protein transport Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT5G50230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.608
Rank 1 · TkA03G440820 · TK1151
Nucleus0.313
Rank 2 · TkA03G440820 · TK1151
Lysosome / Vacuole0.124
Rank 3 · TkA03G440820 · TK1151
Golgi apparatus0.110
Rank 4 · TkA03G440820 · TK1151
Cell membrane0.060
Rank 5 · TkA03G440820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24017Beta-prop_SCAP41-143 aa
PF27862Small_EgtBD46-100 aa
PF08614ATG1649-168 aa
PF06156YabA52-96 aa
PF26052BRE1B58-116 aa
PF30381CEP135_N69-207 aa
PF23770Beta-prop_RIG_1st73-151 aa
PF30907IPGA1_CC85-155 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G440820PF24017Beta-prop_SCAP411436e-1245.9
TkA03G440820PF27862Small_EgtBD461004.38.1
TkA03G440820PF08614ATG16491681.3e-1352.4
TkA03G440820PF06156YabA52960.4112.0
TkA03G440820PF26052BRE1B581160.7910.2
TkA03G440820PF30381CEP135_N692071.38.6
TkA03G440820PF23770Beta-prop_RIG_1st731510.0115.1
TkA03G440820PF30907IPGA1_CC851550.1912.8
TkA03G440820PF06156YabA961750.4112.0
TkA03G440820PF24807WD40_CDC20-Fz991461.1e-29104.4
TkA03G440820PF26052BRE1B1221820.7910.2
TkA03G440820PF00843Arena_nucleocap1361830.4710.0
TkA03G440820PF12787EcsC1532150.08813.2
TkA03G440820PF21031WDR541892542.7e-0524.2
TkA03G440820PF23419WD40_RFWD32012413.7e-0627.2
TkA03G440820PF24796WDR552073412.3e-2280.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NNP0Arabidopsis thalianasp|Q6NNP0|ATG16_ARATH Autophagy-related protein 1661.500%Swiss-ProtHigh

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