TkA03G435470 | RubberDandelionOmics

Gene overview

TkA03G435470

Reference: TK1151 Chr: Chr03 Coordinates: 108351643-108358134 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

745 bp · TkA03G435470|TK1151|cDNA

CCAAAATCGCCCTGTCCGTTACTTCTGCTATTTATCGCGAGATACGAGAGGATCATTCATGTCGTTCTTCAGGACATACTTGAACAGTCCAGTTGGACCTAAAACTACTCATTTCTGGGGTCCTGTAGCCAATTGGGGATTTGTTGCAGCGGCAGTGGCTGACCTTGAGAAGCCTCCAGAGATGGTATCTGGTAACATGACTACAGTGATGTGTGTATATTCAGCTTTATGTATGAGATTTGCGTGGATGATTAGGCCTC...

CDS

Download CDS FASTA

438 bp · TkA03G435470|TK1151|CDS

CCTTTAAATAGTTATCGTGAGAAGGCGGATTTCTGGTATCCCACCGATTCTTCCCACCATAATCATCCACTCCAGTTCTTCTGCTATTATTCGCCGGCTACGAGAGGATCATTCATGTCGTTCTTCAGGACATACTTGAACAGTCCAGTTGGACCTAAAACTACTCATTTCTGGGGTCCTGTAGCCAATTGGGGATTTGTTGCAGCGGCAGTGGCTGACCTTGAGAAGCCTCCAGAGATGGTATCTGGTAACATGACTAC...

Protein

Download Protein FASTA

145 aa · TkA03G435470|TK1151|PROTEIN

PLNSYREKADFWYPTDSSHHNHPLQFFCYYSPATRGSFMSFFRTYLNSPVGPKTTHFWGPVANWGFVAAAVADLEKPPEMVSGNMTTVMCVYSALCMRFAWMIRPRNYLLLGCHAANETVQLFQLSRWARGQGYLQQKEDTTPSD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G435470`
TK1151 ID	TkA03G435470
OH-1004 ID	LXL04_031931
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	75.500
Protein coverage (%)	TK1151 73.103 / OH-1004 99.065 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G435470

Location Chr03:108351643-108358134 (+)

Description Similar to MPC1: Mitochondrial pyruvate carrier 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20090`	Mediates the uptake of pyruvate into mitochondria.	NRGA1, a putative mitochondrial pyruvate carrier, mediates ABA regulation of guard cell ion channels and drought stress responses in Arabidopsis.2014 · DOI: 10.1093/mp/ssu061

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031931 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006850 pyruvate import into mitochondria Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:1990830 cellular response to leukemia inhibitory factor Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0097228 sperm principal piece Cellular Component

GO:0050833 pyruvate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G20090

bta:767977

hsa:51660

mmu:55951

rno:171087

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.930

Rank 1 · TkA03G435470 · TK1151

Cytoplasm0.047

Rank 2 · TkA03G435470 · TK1151

Nucleus0.040

Rank 3 · TkA03G435470 · TK1151

Cell membrane0.024

Rank 4 · TkA03G435470 · TK1151

Endoplasmic reticulum0.017

Rank 5 · TkA03G435470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03650MPC40-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G435470	`PF03650`	MPC	40	132	3.5e-33	115.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q949R9`	Arabidopsis thaliana	sp\|Q949R9\|MPC1_ARATH Mitochondrial pyruvate carrier 1	73.600%	Swiss-Prot	High

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