LXL04_031931 | RubberDandelionOmics

Gene overview

LXL04_031931

Reference: OH-1004 Chr: Chr07 Coordinates: 13437527-13438101 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

324 bp · LXL04_031931|LXL04_031931|OH1004|cDNA

ATGGCTGCCTTTCGAAAATTCCTAGACAGCCCTGTTGGCCCTAAAACCACTCATTTCTGGGGTCCAGTAGCCAACTGGGGATTCGTTGCTGCAGGGTTGGTGGACATGCAGAAGCCTCCAGAGATGATATCTGGCAACATGACAGCAGCAATGTGTGTGTACTCTGGATTATTCATGAGGTTTGCATGGATGGTACAGCCACGTAATTACCTGCTGCTAGCATGTCATGCATCAAATGAAACAGTTCAGATGTATCAGTT...

CDS

Download CDS FASTA

324 bp · LXL04_031931|LXL04_031931|OH1004|CDS

ATGGCTGCCTTTCGAAAATTCCTAGACAGCCCTGTTGGCCCTAAAACCACTCATTTCTGGGGTCCAGTAGCCAACTGGGGATTCGTTGCTGCAGGGTTGGTGGACATGCAGAAGCCTCCAGAGATGATATCTGGCAACATGACAGCAGCAATGTGTGTGTACTCTGGATTATTCATGAGGTTTGCATGGATGGTACAGCCACGTAATTACCTGCTGCTAGCATGTCATGCATCAAATGAAACAGTTCAGATGTATCAGTT...

Protein

Download Protein FASTA

107 aa · LXL04_031931|LXL04_031931|OH1004|PROTEIN

MAAFRKFLDSPVGPKTTHFWGPVANWGFVAAGLVDMQKPPEMISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNETVQMYQFSRWAKSQGYLQQKEDKAPST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031931`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031931

Location Chr07:13437527-13438101 (-)

Description Similar to MPC1: Mitochondrial pyruvate carrier 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20090`	Mediates the uptake of pyruvate into mitochondria.	NRGA1, a putative mitochondrial pyruvate carrier, mediates ABA regulation of guard cell ion channels and drought stress responses in Arabidopsis.2014 · DOI: 10.1093/mp/ssu061

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031931 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006850 pyruvate import into mitochondria Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:1990830 cellular response to leukemia inhibitory factor Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0097228 sperm principal piece Cellular Component

GO:0050833 pyruvate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G20090

bta:767977

hsa:51660

mmu:55951

rno:171087

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.937

Rank 1 · LXL04_031931 · OH-1004

Cytoplasm0.029

Rank 2 · LXL04_031931 · OH-1004

Nucleus0.026

Rank 3 · LXL04_031931 · OH-1004

Cell membrane0.019

Rank 4 · LXL04_031931 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_031931 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03650.20MPC2-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031931	`PF03650.20`	MPC	2	99	3.9e-37	127.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q949R9`	Arabidopsis thaliana	Mitochondrial pyruvate carrier 1	82.692%	Swiss-Prot	strong database homology

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