TkA03G400990 | RubberDandelionOmics

Gene overview

TkA03G400990

Reference: TK1151 Chr: Chr03 Coordinates: 99741293-99746503 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1477 bp · TkA03G400990|TK1151|cDNA

CCATCAATTACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGACTATGTTTATATAATAGACGCAGCATCACATCTTTGAAAGTTCGATCACATCTACTTTAATTCTTTGAAAGTTTTACTATTGTTTCATATACTTGACCAATCATCAAAACGATGCCGATAATTCTAAAAGGGTTTGAACACCTTAGAATGCAAATCGAAGTTTTAAAATCAGCAACCAACGGGTTTGCAGATGGTAATAAAATCGGGG...

CDS

Download CDS FASTA

1200 bp · TkA03G400990|TK1151|CDS

ATGCCGATAATTCTAAAAGGGTTTGAACACCTTAGAATGCAAATCGAAGTTTTAAAATCAGCAACCAACGGGTTTGCAGATGGTAATAAAATCGGGGCTGGAGGATTTGGAGAAGTCTACAAGGGAGAACTCGTTTCAAGCGATTATACGGTGACAGTGGCTGTAAAACGTTTAAATCGTATACATGGCCAAGGAGACTCTGAGTTTTTTAAGGAGGTCATTATGCTTTCATCTTACAAGCATGAAAATATTATCTCCCT...

Protein

Download Protein FASTA

399 aa · TkA03G400990|TK1151|PROTEIN

MPIILKGFEHLRMQIEVLKSATNGFADGNKIGAGGFGEVYKGELVSSDYTVTVAVKRLNRIHGQGDSEFFKEVIMLSSYKHENIISLLGYCDEEDEKILVYEYASKKSLDKHLGNNELTWVIRLKICIGAARGLAYLHDPAGGFTRLLHRDIKSSNILLDKNWNAKIADFGLAKIGPANQQNSIIITNNNNVAGTIGYVDPQYMETGMLTKESDVYSFGVVLFEVLCGRLCISDMVGRSKYLTTWVRYHHKQNRLDEIVW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G400990`
TK1151 ID	TkA03G400990
OH-1004 ID	LXL04_009140
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.200
Protein coverage (%)	TK1151 92.481 / OH-1004 97.297 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G400990

Location Chr03:99741293-99746503 (+)

Description Similar to HERK1: Receptor-like protein kinase HERK 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009140 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0043680 filiform apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G30570

ath:AT3G46290

ath:AT5G39000

ath:AT5G54380

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.452

Rank 1 · TkA03G400990 · TK1151

Cell membrane0.441

Rank 2 · TkA03G400990 · TK1151

Nucleus0.269

Rank 3 · TkA03G400990 · TK1151

Endoplasmic reticulum0.052

Rank 4 · TkA03G400990 · TK1151

Golgi apparatus0.050

Rank 5 · TkA03G400990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase26-298 aa

PF07714PK_Tyr_Ser-Thr29-300 aa

PF03109ABC129-57 aa

PF01636APH139-178 aa

PF03109ABC1146-178 aa

PF12330Haspin_kinase149-188 aa

PF09280XPC-binding321-376 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G400990	`PF00069`	Pkinase	26	298	9.4e-44	150.5
TkA03G400990	`PF07714`	PK_Tyr_Ser-Thr	29	300	1.8e-46	159.3
TkA03G400990	`PF03109`	ABC1	29	57	0.019	14.8
TkA03G400990	`PF01636`	APH	139	178	0.011	16.3
TkA03G400990	`PF03109`	ABC1	146	178	0.019	14.8
TkA03G400990	`PF12330`	Haspin_kinase	149	188	0.036	13.8
TkA03G400990	`PF09280`	XPC-binding	321	376	4.6e-16	58.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	46.700%	Swiss-Prot	Medium
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	45.300%	Swiss-Prot	Medium
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	41.700%	Swiss-Prot	Medium
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	41.000%	Swiss-Prot	Medium
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	43.500%	Swiss-Prot	Medium

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