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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G400930
Reference: TK1151 Chr: Chr03 Coordinates: 99727314-99730090 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2167 bp · TkA03G400930|TK1151|cDNA

TGGCAGGCTCACAAGCTAACAAAAACGGGGACAAAATCTGAAAATGACCGAGAAAGGGGATGGAACATTGGAACCCACCCACACCGCACCCACTAAACAATGAAAATTCTTACACTTGAAGTTGAAGCCCTAATTATTAACTTCAGTTGACCGGAAGGAAGCAATACCATCAATCATCCATGGCCGATGATGCCGCAAGTACCAGCACCATTACTGGTAGAATGAACACCTCCATAACCGACATGTCACATGACCATCTC...

CDS

Download CDS FASTA

1314 bp · TkA03G400930|TK1151|CDS

ATGGCCGATGATGCCGCAAGTACCAGCACCATTACTGGTAGAATGAACACCTCCATAACCGACATGTCACATGACCATCTCTTCTCCATCCTTCTGCTCCTGCCTCTGGAATCCATCCTGTCGTTTGCCATGACTTGTAAGAAAGCTACTCGCTTAACTCACTCCCACACTCTCTGGAAATCCATCTGCACCAGGGATTGGGGTCACTCCACCATCGATGCCTTCGTCAATTCTTCCTCCAATCCTCTTTCTGTCGACTG...

Protein

Download Protein FASTA

437 aa · TkA03G400930|TK1151|PROTEIN

MADDAASTSTITGRMNTSITDMSHDHLFSILLLLPLESILSFAMTCKKATRLTHSHTLWKSICTRDWGHSTIDAFVNSSSNPLSVDWKRLYQRLRNLDRVSCYKLTDSETSPGSRASHSLNYFSGCLVLFGGGSEGGRHLDDTWVAYIGNNFRRMVSWQRVISEGPSGRFGHSCIVIGNSLVLFGGINDTGIRQNDTWMAQLDTTTTTLSWRLLDVGPVTPPTRGAHACCLIDSRRMLIHGGIGLFGTRLGDTWVLDLSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G400930
TK1151 IDTkA03G400930
OH-1004 IDLXL04_009138
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G400930
LocationChr03:99727314-99730090 (+)
DescriptionSimilar to At1g51550: F-box/kelch-repeat protein At1g51550
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g51550 F-box/kelch-repeat protein At1g51550. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009138 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0007623 circadian rhythm Biological Process
GO:0009637 response to blue light Biological Process
GO:0009908 flower development Biological Process
GO:0010114 response to red light Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0042752 regulation of circadian rhythm Biological Process
GO:0043153 entrainment of circadian clock by photoperiod Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G51550
ath:AT2G18915
ath:AT5G57360
dosa:Os06g0694000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.585
Rank 1 · TkA03G400930 · TK1151
Nucleus0.367
Rank 2 · TkA03G400930 · TK1151
Peroxisome0.113
Rank 3 · TkA03G400930 · TK1151
Mitochondrion0.083
Rank 4 · TkA03G400930 · TK1151
Lysosome / Vacuole0.055
Rank 5 · TkA03G400930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box19-60 aa
PF12937F-box-like27-65 aa
PF13854Kelch_HCF93-186 aa
PF24681Kelch_KLHDC2_KLHL20_DRC796-260 aa
PF13415Beta-prop_FBX42101-261 aa
PF24981Beta-prop_ATRN-LZTR1104-148 aa
PF13418Beta-prop_TYW4112-190 aa
PF13854Kelch_HCF115-297 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G400930PF00646F-box19600.002418.4
TkA03G400930PF12937F-box-like27650.001219.3
TkA03G400930PF13854Kelch_HCF931863.4e-2279.9
TkA03G400930PF24681Kelch_KLHDC2_KLHL20_DRC7962608.3e-53179.6
TkA03G400930PF13415Beta-prop_FBX421012611.9e-47162.3
TkA03G400930PF24981Beta-prop_ATRN-LZTR11041489e-30104.6
TkA03G400930PF13418Beta-prop_TYW41121903.4e-2177.0
TkA03G400930PF13854Kelch_HCF1152973.4e-2279.9
TkA03G400930PF01344Kelch_11151451.1e-1144.8
TkA03G400930PF07646Kelch_21151337.9e-1142.1
TkA03G400930PF24996NANM1251900.0001421.5
TkA03G400930PF24981Beta-prop_ATRN-LZTR11572439e-30104.6
TkA03G400930PF13418Beta-prop_TYW41682423.4e-2177.0
TkA03G400930PF07646Kelch_21681907.9e-1142.1
TkA03G400930PF01344Kelch_11691981.1e-1144.8
TkA03G400930PF07646Kelch_22242617.9e-1142.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C8K7Arabidopsis thalianasp|Q9C8K7|FBK21_ARATH F-box/kelch-repeat protein At1g5155052.700%Swiss-ProtHigh

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