Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1693 bp · TkA03G387730|TK1151|cDNA
ATTAAAAGTACACGATAAAAGTAAAACCTGTCTTGTACATTTCACCATCGCTCAAGAGAAAAAAGCATAGGGCAGTGAAGGTGTAGAATCTAGAGAGAAGAAAAGAAGGAGAAAATGAAGGAAAGAGGCGGGAAAGGAGGAGGCCAGTCGTCGGTGAACGAGCGATACTCACAGTGGAAGACTCTCGTCCCCATTCTCTCTACGACTGGCTCGCCAACCACAACCTCGTTTGGCCCTCTCTTTCATGCCGATGGGGGCCA...
828 bp · TkA03G387730|TK1151|CDS
ATGTGCCAAAGTGAACCATTTGTGCTTTCTGGAGGCAAGGACAAATCAGTTGTGTTGTGGAGTATTCATGATCATATCTCGAGTTTGGCAACAGAGTCACCTGGATCCAATGGGCCCAAGACTGAAGATAAAGTAACCGAAAGCCCAAAAATTCAAGCAAGGGGGATCTATCAAGGCCATTCAGATACTGTTGAAGATGTACAGTTTTGCCCCTCCAGTGCGCAAGAGTTTTGTAGTGTTGGTGATGACTCGTGTCTTAT...
Protein
Download Protein FASTA275 aa · TkA03G387730|TK1151|PROTEIN
MCQSEPFVLSGGKDKSVVLWSIHDHISSLATESPGSNGPKTEDKVTESPKIQARGIYQGHSDTVEDVQFCPSSAQEFCSVGDDSCLILWDARTGSSPVVKVEKAHNADLHCVDWNPIDENFILTGSADNTVRLFDRRNLTSNGVGSPVHIFTNHSAAVLCVQWSPDKSSIFGSSAEDGVLNIWDHNKVGERSGPASKFAPGLLFRHSGHRDKVVDFHWNSHDPWTIVSVSDDGESTGGGGTLQIWRMIDLIHRPQEEVIN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G387730 |
|---|---|
| TK1151 ID | TkA03G387730 |
| OH-1004 ID | LXL04_008299 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 93.455 / OH-1004 52.772Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G387730 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:95947846-95952305 (-) | |||||||||
| Description | Similar to MSI4: WD-40 repeat-containing protein MSI4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006334 nucleosome assembly Biological Process GO:0006335 DNA replication-dependent chromatin assembly Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009627 systemic acquired resistance Biological Process GO:0009908 flower development Biological Process GO:0010224 response to UV-B Biological Process GO:0010629 negative regulation of gene expression Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G16780 ath:AT2G19520 ath:AT4G29730 ddi:DDB_G0282529 mmu:19646 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24796WDR552-23 aaPF24780WD40_MABP1-WDR62_1st2-93 aaPF28639DNAI3_WD2-74 aaPF25171Beta-prop_WDR36-Utp21_1st3-21 aaPF24807WD40_CDC20-Fz4-95 aaPF00400WD404-21 aaPF23414Beta-prop_EML_24-26 aaPF24105Beta-prop_CAF1B_HIR14-138 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G387730 | PF24796 | WDR55 | 2 | 23 | 8.9e-10 | 38.8 |
| TkA03G387730 | PF24780 | WD40_MABP1-WDR62_1st | 2 | 93 | 0.0025 | 17.8 |
| TkA03G387730 | PF28639 | DNAI3_WD | 2 | 74 | 0.12 | 11.8 |
| TkA03G387730 | PF25171 | Beta-prop_WDR36-Utp21_1st | 3 | 21 | 8e-05 | 22.9 |
| TkA03G387730 | PF24807 | WD40_CDC20-Fz | 4 | 95 | 2.5e-25 | 90.1 |
| TkA03G387730 | PF00400 | WD40 | 4 | 21 | 6.3e-25 | 87.2 |
| TkA03G387730 | PF23414 | Beta-prop_EML_2 | 4 | 26 | 4.3e-14 | 53.3 |
| TkA03G387730 | PF24105 | Beta-prop_CAF1B_HIR1 | 4 | 138 | 6.7e-13 | 49.1 |
| TkA03G387730 | PF23760 | Beta-prop_DCAF12 | 4 | 137 | 0.0082 | 15.8 |
| TkA03G387730 | PF24814 | WD40_Prp19 | 5 | 23 | 3e-22 | 79.7 |
| TkA03G387730 | PF23409 | Beta-prop_EML | 5 | 22 | 6.7e-08 | 33.1 |
| TkA03G387730 | PF25175 | Beta-prop_WDR5 | 6 | 23 | 2.6e-23 | 83.5 |
| TkA03G387730 | PF30552 | CFAP251_N | 6 | 26 | 0.0051 | 16.7 |
| TkA03G387730 | PF23381 | Beta-prop_IFT122_1st | 7 | 23 | 5.1e-19 | 69.4 |
| TkA03G387730 | PF23609 | Beta-prop_EIPR1 | 7 | 20 | 6.1e-14 | 52.9 |
| TkA03G387730 | PF25172 | Beta-prop_WDR3_2nd | 7 | 22 | 7.7e-10 | 39.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.