TkA03G387360 | RubberDandelionOmics

Gene overview

TkA03G387360

Reference: TK1151 Chr: Chr03 Coordinates: 95834775-95837264 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1347 bp · TkA03G387360|TK1151|cDNA

CTTTTTCTTGGTAGGTACGCGAGTAACCATTTGCAAGTTTTCCTTGTAGGTCCCTGGTCCCCTGTCACCCTGTGCAACCCCTACTAATATCCAGATCCCAATCCTGATCCAATTACGATTCACTAAACTTGCCGATTGACTTCGTTATCCTAATTCACCAATTTCTAGGTTATTTTATGTTACGTTATTCCACTAATGCGTGTACGAAATCTTGATATTCGTGTTTACGGATGCATTTGAACTAGAAATTACCACAATAA...

CDS

Download CDS FASTA

759 bp · TkA03G387360|TK1151|CDS

ATGGGTGCGGCGGCGAGCTCGTCATCCTCGAGATCGAGCTCGCTGACGGTGGGGGAAAAAGTATGTGCGGCGTTCATACCGTGTGCGGTTATAGTTGAAGTTCTGATCTACAGCTTATTGTCCTGTTTCAATGCTCAGCGCAGCCGTCTGGTTAAACATGTGCAGACTTTTGACGAAGTTAGTCGTCTCGCTCGTAATTCTCCATTTTCGGTTAACGAAGTGGAAGCATTACGCGAATTGTTCAATAAGTTGAGCAATTC...

Protein

Download Protein FASTA

252 aa · TkA03G387360|TK1151|PROTEIN

MGAAASSSSSRSSSLTVGEKVCAAFIPCAVIVEVLIYSLLSCFNAQRSRLVKHVQTFDEVSRLARNSPFSVNEVEALRELFNKLSNSIIMDGLIHKEELQLALFNSAGGENLFLNRVFDLFDEKQNGVIEFEEFVHVLSIFHPNAPMEQKIDFAFRLYDLRRTGYIEREEVREMIVATLKETGMVLSEEILEQIIDKTFMDADADMDGRISKDEWRNFVIYRPQLLKNMTLPSLRDVTTAFPSFIFNTGVDD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G387360`
TK1151 ID	TkA03G387360
OH-1004 ID	LXL04_008302
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G387360

Location Chr03:95834775-95837264 (+)

Description Similar to CBL10: Calcineurin B-like protein 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33000`	Acts as a calcium sensor.	SCABP8/CBL10, a putative calcium sensor, interacts with the protein kinase SOS2 to protect Arabidopsis shoots from salt stress.2007 · DOI: 10.1105/tpc.106.042291 The calcium sensor CBL10 mediates salt tolerance by regulating ion homeostasis in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03249.x Calcineurin B-like protein CBL10 directly interacts with AKT1 and modulates K+ homeostasis in Arabidopsis.2013 · DOI: 10.1111/tpj.12123

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0579600`	Acts as a calcium sensor.	No verified direct reference in this release
`Os01g0711500`	Acts as a calcium sensor.	No verified direct reference in this release
`Os12g0162400`	Acts as a calcium sensor.	No verified direct reference in this release
`Os12g0597000`	Acts as a calcium sensor.	A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function.2005 · DOI: 10.1104/pp.105.062703

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008302 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019722 calcium-mediated signaling Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0043266 regulation of potassium ion transport Biological Process

GO:0050801 monoatomic ion homeostasis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0032578 aleurone grain membrane Cellular Component

GO:0005509 calcium ion binding Molecular Function

GO:0019900 kinase binding Molecular Function

KEGG gene cross-reference

ath:AT4G33000

dosa:Os01g0711500

dosa:Os12g0162400

dosa:Os12g0597000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.256

Rank 1 · TkA03G387360 · TK1151

Cytoplasm0.248

Rank 2 · TkA03G387360 · TK1151

Endoplasmic reticulum0.214

Rank 3 · TkA03G387360 · TK1151

Lysosome / Vacuole0.179

Rank 4 · TkA03G387360 · TK1151

Golgi apparatus0.169

Rank 5 · TkA03G387360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14883GHL1355-120 aa

PF13499EF-hand_764-81 aa

PF12763EH73-138 aa

PF25825SAPC2_N74-87 aa

PF13405EF-hand_677-103 aa

PF20743DUF5580_C79-90 aa

PF10591SPARC_Ca_bdg81-135 aa

PF13202EF-hand_590-100 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G387360	`PF14883`	GHL13	55	120	0.0098	15.7
TkA03G387360	`PF13499`	EF-hand_7	64	81	1.3e-14	55.0
TkA03G387360	`PF12763`	EH	73	138	0.00021	21.9
TkA03G387360	`PF25825`	SAPC2_N	74	87	0.34	11.5
TkA03G387360	`PF13405`	EF-hand_6	77	103	7.3e-15	53.9
TkA03G387360	`PF20743`	DUF5580_C	79	90	0.12	13.1
TkA03G387360	`PF10591`	SPARC_Ca_bdg	81	135	0.0034	18.4
TkA03G387360	`PF13202`	EF-hand_5	90	100	2.5e-13	49.5
TkA03G387360	`PF00036`	EF-hand_1	91	103	2.2e-17	62.0
TkA03G387360	`PF13499`	EF-hand_7	91	138	1.3e-14	55.0
TkA03G387360	`PF13833`	EF-hand_8	96	138	2.2e-05	24.8
TkA03G387360	`PF30347`	RSA-1_C	101	177	0.0015	19.5
TkA03G387360	`PF23564`	EF-hand_FSTL1	109	138	7.3e-06	27.1
TkA03G387360	`PF23564`	EF-hand_FSTL1	110	139	7.3e-06	27.1
TkA03G387360	`PF30624`	EF_SSP120	113	135	3.9e-06	28.1
TkA03G387360	`PF00036`	EF-hand_1	114	139	2.2e-17	62.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7FRS8`	Arabidopsis thaliana	sp\|Q7FRS8\|CNBLA_ARATH Calcineurin B-like protein 10	65.900%	Swiss-Prot	High
`Q3HRN8`	Oryza sativa subsp. japonica	sp\|Q3HRN8\|CNBL9_ORYSJ Calcineurin B-like protein 9	57.500%	Swiss-Prot	High
`Q3HRN7`	Oryza sativa subsp. japonica	sp\|Q3HRN7\|CNBLA_ORYSJ Calcineurin B-like protein 10	58.100%	Swiss-Prot	High
`Q3HRP1`	Oryza sativa subsp. japonica	sp\|Q3HRP1\|CNBL6_ORYSJ Calcineurin B-like protein 6	61.800%	Swiss-Prot	High
`Q3HRP5`	Oryza sativa subsp. japonica	sp\|Q3HRP5\|CNBL2_ORYSJ Calcineurin B-like protein 2	59.400%	Swiss-Prot	High

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