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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G339860
Reference: TK1151 Chr: Chr03 Coordinates: 83635160-83641428 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3959 bp · TkA03G339860|TK1151|cDNA

ATATATTATGGTTTGGCGCGTTTAGACAAACGGACATCCACCGTGTATGCAACCCACTACACGGGTTTTGTTCATCATTCCTCCGCGAACCAGTGACACCAGAAGAAAGCCCTAAAACCAGTTGGAAAAACTGTTGAATATTGCCTTACACCACGAATGGAAGAACGAGAGACGGAAATTGAAGTCCGAGCCCTAACCGGTGAAACGATCACAGTCTCAATTTCCTCGAGTAGGACAATTCAAGAACTCAAGCTTCTCCT...

CDS

Download CDS FASTA

3639 bp · TkA03G339860|TK1151|CDS

ATGGAAGAACGAGAGACGGAAATTGAAGTCCGAGCCCTAACCGGTGAAACGATCACAGTCTCAATTTCCTCGAGTAGGACAATTCAAGAACTCAAGCTTCTCCTTAAACAAATATTTCCTCCCGCAACCACCTCCTCGAACTTCCACCTTTTTCTCAAGGGCACGAAACTAAGTTTGCAGAGTCAGATAAGTAGTACCTGGATTTCCGATGGAGAATTTATTGTTCTTCTTCCGTTCACAAAGAAGGACAAACAGAAAAC...

Protein

Download Protein FASTA

1212 aa · TkA03G339860|TK1151|PROTEIN

MEERETEIEVRALTGETITVSISSSRTIQELKLLLKQIFPPATTSSNFHLFLKGTKLSLQSQISSTWISDGEFIVLLPFTKKDKQKTVEPSENDTNSQNFHQCSTSSFAESAWSDMMQDLSSLQDIEIDENQIYSEANNRSTESNTQNEAKKSLFDEALIELLNTLQSCDSDEPDEKSCQGFMQVLESVNCLSDLKTRNCMLMNANTRITESCGSASSSNPCTCPSWLKVHLKAFYFLNIYCSFLQVQQRKVTLLSLERG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G339860
TK1151 IDTkA03G339860
OH-1004 IDLXL04_008733
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G339860
LocationChr03:83635160-83641428 (-)
DescriptionSimilar to HRQ1: ATP-dependent helicase HRQ1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008733 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006289 nucleotide-excision repair Biological Process
GO:0032202 telomere assembly Biological Process
GO:0032204 regulation of telomere maintenance Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0042275 error-free postreplication DNA repair Biological Process
GO:0070914 UV-damage excision repair Biological Process
GO:1901255 nucleotide-excision repair involved in interstrand cross-link repair Biological Process
GO:0005634 nucleus Cellular Component
GO:0035861 site of double-strand break Cellular Component
GO:0000405 bubble DNA binding Molecular Function
GO:0003676 nucleic acid binding Molecular Function
GO:0003697 single-stranded DNA binding Molecular Function
KEGG gene cross-reference
bsu:BSU22220
mja:MJ_1574
msb:LJ00_30465
msm:MSMEG_6160
sce:YDR291W
spo:2542036
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.341
Rank 1 · TkA03G339860 · TK1151
Nucleus0.333
Rank 2 · TkA03G339860 · TK1151
Cytoplasm0.225
Rank 3 · TkA03G339860 · TK1151
Mitochondrion0.119
Rank 4 · TkA03G339860 · TK1151
Peroxisome0.045
Rank 5 · TkA03G339860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11976Rad60-SLD7-74 aa
PF00240ubiquitin8-76 aa
PF10302Dsc3_N19-104 aa
PF04851ResIII126-157 aa
PF09369MZB155-172 aa
PF00271Helicase_C297-327 aa
PF11976Rad60-SLD304-335 aa
PF10302Dsc3_N308-335 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G339860PF11976Rad60-SLD7740.0414.4
TkA03G339860PF00240ubiquitin8760.0002921.3
TkA03G339860PF10302Dsc3_N191040.2912.4
TkA03G339860PF04851ResIII1261572.4e-0628.3
TkA03G339860PF09369MZB1551723e-2073.4
TkA03G339860PF00271Helicase_C2973271.4e-1248.5
TkA03G339860PF11976Rad60-SLD3043350.0414.4
TkA03G339860PF10302Dsc3_N3083350.2912.4
TkA03G339860PF08066PMC2NT3223820.1113.8
TkA03G339860PF08066PMC2NT4284550.1113.8
TkA03G339860PF04851ResIII4626002.4e-0628.3
TkA03G339860PF00270DEAD4656351.2e-29103.9
TkA03G339860PF00271Helicase_C5075541.4e-1248.5
TkA03G339860PF00271Helicase_C7138181.4e-1248.5
TkA03G339860PF00270DEAD7147481.2e-29103.9
TkA03G339860PF22982WHD_HRQ18549281e-1352.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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