TkA03G321560 | RubberDandelionOmics

Gene overview

TkA03G321560

Reference: TK1151 Chr: Chr03 Coordinates: 79066178-79067970 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

854 bp · TkA03G321560|TK1151|cDNA

GCCATCCCTAACTATCAGCCCTCTCGACACAAAAACACAGACACAGAAATACCCCCTCTCTCTCCACTTTCTCTCTCTAGAAGCCATGACGAGCCCCTCTGCTTCCTCTCGCAAGGTTTTAAGCAAGATCGCAACAAATCGTCTCCAGAAAGAGTTAATGGAATGGCAGGTCAATCCACCAGCTGGATTCAAACATAAAGTCACTGATAATCTCCAAAGATGGGTAATTGAGGTCAACGGCGCACCCGGCACTTTGTATT...

CDS

Download CDS FASTA

486 bp · TkA03G321560|TK1151|CDS

ATGACGAGCCCCTCTGCTTCCTCTCGCAAGGTTTTAAGCAAGATCGCAACAAATCGTCTCCAGAAAGAGTTAATGGAATGGCAGGTCAATCCACCAGCTGGATTCAAACATAAAGTCACTGATAATCTCCAAAGATGGGTAATTGAGGTCAACGGCGCACCCGGCACTTTGTATTCTAATGAAACATTCCAGCTGCAAGTTGATTTTCCCGAGCACTACCCCATGGAAGCGCCACAGGTAATTTTTATTCCTCCAGCTCC...

Protein

Download Protein FASTA

161 aa · TkA03G321560|TK1151|PROTEIN

MTSPSASSRKVLSKIATNRLQKELMEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETFQLQVDFPEHYPMEAPQVIFIPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSSTKQQPNDDERYVKNCRNGRSPKETRWWFHDDKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G321560`
TK1151 ID	TkA03G321560
OH-1004 ID	LXL04_007213
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	84.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G321560

Location Chr03:79066178-79067970 (-)

Description Similar to UBC16: Probable ubiquitin-conjugating enzyme E2 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42990`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g75440`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g45050`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	Functional expression and molecular characterization of AtUBC2-1, a novel ubiquitin-conjugating enzyme (E2) from Arabidopsis thaliana.1993 · DOI: 10.1007/bf00029013
`At4g36410`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0004842 ubiquitin-protein transferase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0061631 ubiquitin conjugating enzyme activity Molecular Function

KEGG gene cross-reference

ath:AT1G45050

ath:AT1G75440

ath:AT4G36410

ath:AT5G42990

ddi:DDB_G0268938

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580

Rank 1 · TkA03G321560 · TK1151

Cytoplasm0.552

Rank 2 · TkA03G321560 · TK1151

Cell membrane0.072

Rank 3 · TkA03G321560 · TK1151

Endoplasmic reticulum0.069

Rank 4 · TkA03G321560 · TK1151

Mitochondrion0.061

Rank 5 · TkA03G321560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00179UQ_con19-154 aa

PF05773RWD57-86 aa

PF08694UFC162-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G321560	`PF00179`	UQ_con	19	154	2.3e-39	134.9
TkA03G321560	`PF05773`	RWD	57	86	0.002	19.0
TkA03G321560	`PF08694`	UFC1	62	105	0.0056	17.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMM0`	Arabidopsis thaliana	sp\|Q9FMM0\|UBC18_ARATH Probable ubiquitin-conjugating enzyme E2 18	85.700%	Swiss-Prot	High
`Q9FWT2`	Arabidopsis thaliana	sp\|Q9FWT2\|UBC16_ARATH Probable ubiquitin-conjugating enzyme E2 16	85.100%	Swiss-Prot	High
`P42743`	Arabidopsis thaliana	sp\|P42743\|UBC15_ARATH Ubiquitin-conjugating enzyme 15	83.200%	Swiss-Prot	High
`O23239`	Arabidopsis thaliana	sp\|O23239\|UBC17_ARATH Probable ubiquitin-conjugating enzyme E2 17	79.500%	Swiss-Prot	High

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