TkA03G321550 | RubberDandelionOmics

Gene overview

TkA03G321550

Reference: TK1151 Chr: Chr03 Coordinates: 79057670-79065212 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1313 bp · TkA03G321550|TK1151|cDNA

AAAACTGGCTTCTAAAAATCGTAGCTGCTGTGGAGCACAGAAAAGTCAATCCCCCTTCTTTGAATTTGCGCCTTTTTCCTAAAATATTGTCAAAGTAACCTCAAAGAAACATGGAAGCCATTGGAATTGCAGAAGATGTTACCCAATTAATAGGAAATACCCCATGGTTTATCTTAAAAAGATCGTCGATGGTTGTGGTGCTCGTATTGCTGCCAAATTAGAGACCATGGAACCTTGCTCCAGTGTAAAAGACCGGATTG...

CDS

Download CDS FASTA

969 bp · TkA03G321550|TK1151|CDS

ATGGAAGCCATTGGAATTGCAGAAGATGTTACCCAATTAATAGGAAATACCCCCATGGTTTATCTTAAAAAGATCGTCGATGGTTGTGGTGCTCGCATTGCTGCCAAATTAGAGACCATGGAACCCTGCTCCAGTGTAAAAGACCGGATTGCACTTGGTATGATAAAAGATGCAGAAGAGAAGGGTCTGATTACCCCTGGGAAAACGGTTCTTGTTGAGGCTACAAGTGGCAATACGGGAATAGGGTTGGCGTTCATTGC...

Protein

Download Protein FASTA

322 aa · TkA03G321550|TK1151|PROTEIN

MEAIGIAEDVTQLIGNTPMVYLKKIVDGCGARIAAKLETMEPCSSVKDRIALGMIKDAEEKGLITPGKTVLVEATSGNTGIGLAFIAATRGYKLIIAMPSTYSMERRIVMRAFGAELRIFDASKGIEVFFQKVDEIVAKTPNSYFLKQFDNPANPKIHYETTGPEIWDGCKGKVDAFVSGIGTGGTVTGVGRFLKEKNVNIKVYGVEPAESPVLNGGKPGPHKIQGIGAGVIPDVLDVSVLDEVVMISSEEAIETAKLLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G321550`
TK1151 ID	TkA03G321550
OH-1004 ID	LXL04_008856
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G321550

Location Chr03:79057670-79065212 (+)

Description Similar to Cysteine synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59760`	Acts as a cysteine synthase.	No verified direct reference in this release
`At2g43750`	Acts as a major cysteine synthase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0747800`	Cysteine synthase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008856 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006535 L-cysteine biosynthetic process from L-serine Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0009836 fruit ripening, climacteric Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009509 chromoplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004124 cysteine synthase activity Molecular Function

GO:0047458 beta-pyrazolylalanine synthase activity Molecular Function

GO:0050017 L-3-cyanoalanine synthase activity Molecular Function

GO:0050234 pyrazolylalanine synthase activity Molecular Function

GO:0050461 L-mimosine synthase activity Molecular Function

KEGG gene cross-reference

ag:BAA05965

zma:542438

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.731

Rank 1 · TkA03G321550 · TK1151

Nucleus0.283

Rank 2 · TkA03G321550 · TK1151

Plastid0.076

Rank 3 · TkA03G321550 · TK1151

Mitochondrion0.065

Rank 4 · TkA03G321550 · TK1151

Peroxisome0.061

Rank 5 · TkA03G321550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00291PALP10-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G321550	`PF00291`	PALP	10	297	1.9e-74	251.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q43725`	Arabidopsis thaliana	sp\|Q43725\|CYSKM_ARATH Cysteine synthase, mitochondrial	62.200%	Swiss-Prot	High
`P47999`	Arabidopsis thaliana	sp\|P47999\|CYSKP_ARATH Cysteine synthase, chloroplastic/chromoplastic	67.600%	Swiss-Prot	High
`Q9XEA8`	Oryza sativa subsp. japonica	sp\|Q9XEA8\|CYSK2_ORYSJ Cysteine synthase	72.300%	Swiss-Prot	High

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