Gene Card
Gene overview
cDNA / CDS / Protein Sequences
969 bp · LXL04_008856|LXL04_008856|OH1004|cDNA
ATGGAAACCATTGGAATTGCAGAAGATGTTACCGAATTAATAGGAAATACCCCCATGGTTTATCTTAAAAAGATCGTCGATGGTTGTGGTGCTCGCATTGCTGCCAAATTAGAGACCATGGAACCCTGCTCCAGTGTAAAAGACCGGATTGCACTTGGTATGATAAAAGATGCAGAAGAGAAGGGTCTGATTACCCCTGGGAAAACGGTTCTTGTTGAGGCTACAAGTGGCAATACGGGAATAGGGTTGGCGTTCATTGC...
969 bp · LXL04_008856|LXL04_008856|OH1004|CDS
ATGGAAACCATTGGAATTGCAGAAGATGTTACCGAATTAATAGGAAATACCCCCATGGTTTATCTTAAAAAGATCGTCGATGGTTGTGGTGCTCGCATTGCTGCCAAATTAGAGACCATGGAACCCTGCTCCAGTGTAAAAGACCGGATTGCACTTGGTATGATAAAAGATGCAGAAGAGAAGGGTCTGATTACCCCTGGGAAAACGGTTCTTGTTGAGGCTACAAGTGGCAATACGGGAATAGGGTTGGCGTTCATTGC...
Protein
Download Protein FASTA322 aa · LXL04_008856|LXL04_008856|OH1004|PROTEIN
METIGIAEDVTELIGNTPMVYLKKIVDGCGARIAAKLETMEPCSSVKDRIALGMIKDAEEKGLITPGKTVLVEATSGNTGIGLAFIAATRGYKLIIAMPSTYSMERRIVMRAFGAELRIFDASKGIEVFFQKVDEIVAKTPNSYFLKQFDNPANPKIHYETTGPEIWDGCKGKVDAFVSGIGTGGTVTGVGRFLKEKNVNIKVYGVEPAESPVLNGGKPGPHKIQGIGAGVIPDVLDVSVLDEVVMISSEEAIETAKLLA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008856 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008856 |
|---|---|
| Location | Chr02:110489797-110492010 (-) |
| Description | Similar to Cysteine synthase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006535 L-cysteine biosynthetic process from L-serine Biological Process GO:0009567 double fertilization forming a zygote and endosperm Biological Process GO:0009836 fruit ripening, climacteric Biological Process GO:0009860 pollen tube growth Biological Process GO:0005737 cytoplasm Cellular Component GO:0009509 chromoplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0004124 cysteine synthase activity Molecular Function GO:0047458 beta-pyrazolylalanine synthase activity Molecular Function GO:0050017 L-3-cyanoalanine synthase activity Molecular Function GO:0050234 pyrazolylalanine synthase activity Molecular Function GO:0050461 L-mimosine synthase activity Molecular Function |
| KEGG gene cross-reference | ag:BAA05965 zma:542438 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00291.32PALP10-297 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008856 | PF00291.32 | PALP | 10 | 297 | 3.3e-74 | 250.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.