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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G315580
Reference: TK1151 Chr: Chr03 Coordinates: 77494885-77496500 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

666 bp · TkA03G315580|TK1151|cDNA

ATGGTCCAGGTCCCTAAGTTCTGTCTTTACTGTGGTATTGGTCCAGGATCCAGGATTAATAAACCCATCCCAACAACCGGGCCATCCCACTATCTTCATGAATTACACTTAATATCTTTTGGTGTTGGATGTTGTGCAGGAAGGCTTCAAGAACTTGTGTTTAGTGCAGACATACATGTGGACCTTAAATCTGTCAACATGCAGAACAACTTATCCTTCCATCTTTCCCAATTCTCAATTCTTTCTCGGGTTCTTCAAGA...

CDS

Download CDS FASTA

666 bp · TkA03G315580|TK1151|CDS

ATGGTCCAGGTCCCTAAGTTCTGTCTTTACTGTGGTATTGGTCCAGGATCCAGGATTAATAAACCCATCCCAACAACCGGGCCATCCCACTATCTTCATGAATTACACTTAATATCTTTTGGTGTTGGATGTTGTGCAGGAAGGCTTCAAGAACTTGTGTTTAGTGCAGACATACATGTGGACCTTAAATCTGTCAACATGCAGAACAACTTATCCTTCCATCTTTCCCAATTCTCAATTCTTTCTCGGGTTCTTCAAGA...

Protein

Download Protein FASTA

221 aa · TkA03G315580|TK1151|PROTEIN

MVQVPKFCLYCGIGPGSRINKPIPTTGPSHYLHELHLISFGVGCCAGRLQELVFSADIHVDLKSVNMQNNLSFHLSQFSILSRVLQDSTTHQSTQLHIPLISTSTTTDATTSTSNSSIQLPTEDSQSEYYILKQLSCSITAESPVPRDPPDTPKSTQLWVGSGSISGFEVTISLSQIQMLLSVAELSGASSKQTTATVHQRQIRLQMYIWPPSIPSFSIIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G315580
TK1151 IDTkA03G315580
OH-1004 IDLXL04_024272
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)92.500
Protein coverage (%)TK1151 71.946 / OH-1004 5.366
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G315580
LocationChr03:77494885-77496500 (-)
DescriptionSimilar to tipC: Putative vacuolar protein sorting-associated protein 13C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024272 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000045 autophagosome assembly Biological Process
GO:0006623 protein targeting to vacuole Biological Process
GO:0006869 lipid transport Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0016236 macroautophagy Biological Process
GO:0045053 protein retention in Golgi apparatus Biological Process
GO:0045324 late endosome to vacuole transport Biological Process
GO:0120009 intermembrane lipid transfer Biological Process
GO:0120010 intermembrane phospholipid transfer Biological Process
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
cthr:CTHT_0020450
ddi:DDB_G0267422
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.459
Rank 1 · TkA03G315580 · TK1151
Nucleus0.399
Rank 2 · TkA03G315580 · TK1151
Endoplasmic reticulum0.110
Rank 3 · TkA03G315580 · TK1151
Mitochondrion0.090
Rank 4 · TkA03G315580 · TK1151
Golgi apparatus0.089
Rank 5 · TkA03G315580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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