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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G181140
Reference: TK1151 Chr: Chr03 Coordinates: 45681518-45686068 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2541 bp · TkA03G181140|TK1151|cDNA

ACTTTCGATCTCGTGGTTGGGTCAATACTCAATACGGTTCTGATACCGACAAAGGTTTCGGGGCAAGTAGTTGACGACGCTCCATCGTCTGAATTTCATAGTGAAGCAATCTTTCCCCATTGTACCGACCATATCATGGTGGCTAGAAAGTTCCTCATCAACCACCAAGATTCCAACTTTGATGTCGACTACGACACTGAAGATGGTTTTGAAGTCTTCAAATTCCAGTTGTTTTCCCTCACGGCAGTTCCTCCAGATGA...

CDS

Download CDS FASTA

2277 bp · TkA03G181140|TK1151|CDS

ACTTTCGATCTCGTGGTTGGGTCAATACTCAATACGGTTCTGATACCGACAAAGGTTTCGGGGCAAGTAGTTGACGACGCTCCATCGTCTGAATTTCATAGTGAAGCAATCTTTCCCCATTGTACCGACCATATCATGGTGGCTAGAAAGTTCCTCATCAACCACCAAGATTCCAACTTTGATGTCGACTACGACACTGAAGATGGTTTTGAAGTCTTCAAATTCCAGTTGTTTTCCCTCACGGCAGTTCCTCCAGATGA...

Protein

Download Protein FASTA

758 aa · TkA03G181140|TK1151|PROTEIN

TFDLVVGSILNTVLIPTKVSGQVVDDAPSSEFHSEAIFPHCTDHIMVARKFLINHQDSNFDVDYDTEDGFEVFKFQLFSLTAVPPDEQKIFAGDDDRIVSNDSDLIAISDKLRLVSIKDENPQLDSEIVKSDEELARMLQAEEEALMLQQFAVSQDNGQFQQKIRPYVDQVLLYEDVRRQVAAKNTVPLETLQEKALVALAKEGNFKPSKPEVDHAFLLQLLFWFKQSFKWVNSPPCEDCGNETTNQGMGVPNSSESASL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G181140
TK1151 IDTkA03G181140
OH-1004 IDLXL04_007478
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 98.285 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G181140
LocationChr03:45681518-45686068 (-)
DescriptionSimilar to PNG1: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g49570 Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0497400 Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007478 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006516 glycoprotein catabolic process Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0010188 response to microbial phytotoxin Biological Process
GO:0010193 response to ozone Biological Process
GO:0042176 regulation of protein catabolic process Biological Process
GO:1903332 regulation of protein folding Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT5G49570
dosa:Os07g0497400
dre:553627
gga:420655
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.563
Rank 1 · TkA03G181140 · TK1151
Nucleus0.385
Rank 2 · TkA03G181140 · TK1151
Mitochondrion0.079
Rank 3 · TkA03G181140 · TK1151
Cell membrane0.079
Rank 4 · TkA03G181140 · TK1151
Endoplasmic reticulum0.069
Rank 5 · TkA03G181140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20400BAR_4115-186 aa
PF24815HMG_WDHD1116-143 aa
PF03835Rad4183-209 aa
PF01841Transglut_core256-340 aa
PF03835Rad4322-430 aa
PF22633F5_F8_type_C_2355-392 aa
PF20400BAR_4375-443 aa
PF24815HMG_WDHD1450-460 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G181140PF20400BAR_41151860.2911.6
TkA03G181140PF24815HMG_WDHD11161430.9910.1
TkA03G181140PF03835Rad41832099.3e-0935.8
TkA03G181140PF01841Transglut_core2563402.4e-1763.9
TkA03G181140PF03835Rad43224309.3e-0935.8
TkA03G181140PF22633F5_F8_type_C_23553920.06714.5
TkA03G181140PF20400BAR_43754430.2911.6
TkA03G181140PF24815HMG_WDHD14504600.9910.1
TkA03G181140PF00754F5_F8_type_C6297340.0005520.8
TkA03G181140PF22633F5_F8_type_C_26337050.06714.5
TkA03G181140PF21471Reelin_subrepeat-B6717420.1912.2
TkA03G181140PF24815HMG_WDHD16917090.9910.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FGY9Arabidopsis thalianasp|Q9FGY9|PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase60.200%Swiss-ProtHigh
Q7F0R1Oryza sativa subsp. japonicasp|Q7F0R1|PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase54.700%Swiss-ProtMedium

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