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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G178780
Reference: TK1151 Chr: Chr03 Coordinates: 45129728-45132600 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1379 bp · TkA03G178780|TK1151|cDNA

CACTGAGACTCCTTTCTAACAAAATCATGTAAAGCGTGAAGACGGAGTTCGAAATTAGACAGAGGAGAACAAGAAGATAAAGCAAAGGTGAATCGTAACTGATCTGCAAGGTCTCATCCTCAATGGCGCCGACCAAATCTAAACCATCGAATTCAAAGAATTATTCAGAAAACTCAGGTGTTAACAAAAAAATATGGTTCTATTCGTTGTTGCTTACAATTCAATATGGTGCTCAGCCTCTCATCTCCAAACGCTGCATC...

CDS

Download CDS FASTA

996 bp · TkA03G178780|TK1151|CDS

ATGGCGCCGACCAAATCTAAACCATCGAATTCAAAGAATTATTCAGAAAACTCAGGTGTTAACAAAAAAATATGGTTCTATTCGTTGTTGCTTACAATTCAATATGGTGCTCAGCCTCTCATCTCCAAACGCTGCATCGGGCGAGAAGTGATTGTGACTTCATCTGTTTTGGCATGCGAGTTAGTAAAGGTTATTTGTGCAATTGGTTTAATGGCAAAAGATGGGAGTCTAAAAAGAGCAATGAAGGAATGGACTTTGAT...

Protein

Download Protein FASTA

331 aa · TkA03G178780|TK1151|PROTEIN

MAPTKSKPSNSKNYSENSGVNKKIWFYSLLLTIQYGAQPLISKRCIGREVIVTSSVLACELVKVICAIGLMAKDGSLKRAMKEWTLMGSLSASGLPAAIYALQNSLLQISYRNLDSLTFSMLNQTKLIFTAFFTYIILRQKQSYQQIGALLILILAAVLLSIGEGSRKNYGSDNRDEIVLYGIVPVLIASVLSGLASALCQWASQVKKHSSYLMTVEMSIVGSLCLLASISKSPDGQAMRQHGFFHGWTPLTFIPVFINA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G178780
TK1151 IDTkA03G178780
OH-1004 IDLXL04_007456
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G178780
LocationChr03:45129728-45132600 (-)
DescriptionSimilar to ROCK1: UDP-N-acetylglucosamine transporter ROCK1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g65000 Mediates the transport of UDP-linked acetylated hexosamines across the endoplasmic reticulum (ER) membrane.
Arabidopsis ROCK1 transports UDP-GlcNAc/UDP-GalNAc and regulates ER protein quality control and cytokinin activity.2015 · DOI: 10.1073/pnas.1419050112

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007456 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010584 pollen exine formation Biological Process
GO:0015739 sialic acid transport Biological Process
GO:0015789 UDP-N-acetylgalactosamine transmembrane transport Biological Process
GO:0055085 transmembrane transport Biological Process
GO:1902183 regulation of shoot apical meristem development Biological Process
GO:1904293 negative regulation of ERAD pathway Biological Process
GO:1990569 UDP-N-acetylglucosamine transmembrane transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G65000
bta:520918
cfa:442991
mmu:229782
rno:310808
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.625
Rank 1 · TkA03G178780 · TK1151
Endoplasmic reticulum0.241
Rank 2 · TkA03G178780 · TK1151
Cytoplasm0.083
Rank 3 · TkA03G178780 · TK1151
Lysosome / Vacuole0.047
Rank 4 · TkA03G178780 · TK1151
Cell membrane0.041
Rank 5 · TkA03G178780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA26-161 aa
PF16913PUNUT27-75 aa
PF04142Nuc_sug_transp47-319 aa
PF14808TMEM16459-158 aa
PF30375OpgB_N85-162 aa
PF16913PUNUT98-225 aa
PF14808TMEM164121-227 aa
PF20040DUF6442125-158 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G178780PF00892EamA261610.0001123.2
TkA03G178780PF16913PUNUT27751.7e-1041.4
TkA03G178780PF04142Nuc_sug_transp473191.7e-33116.8
TkA03G178780PF14808TMEM164591581.39.2
TkA03G178780PF30375OpgB_N851620.1912.5
TkA03G178780PF16913PUNUT982251.7e-1041.4
TkA03G178780PF14808TMEM1641212271.39.2
TkA03G178780PF20040DUF64421251580.8110.7
TkA03G178780PF12648TcpE1461930.4311.8
TkA03G178780PF00892EamA1813170.0001123.2
TkA03G178780PF30375OpgB_N1832370.1912.5
TkA03G178780PF20040DUF64422052280.8110.7
TkA03G178780PF12648TcpE2493040.4311.8
TkA03G178780PF20040DUF64422753290.8110.7
TkA03G178780PF30375OpgB_N2813160.1912.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LES0Arabidopsis thalianasp|Q8LES0|ROCK1_ARATH UDP-N-acetylglucosamine transporter ROCK177.000%Swiss-ProtHigh

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