TkA03G178260 | RubberDandelionOmics

Gene overview

TkA03G178260

Reference: TK1151 Chr: Chr03 Coordinates: 45007523-45011695 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2432 bp · TkA03G178260|TK1151|cDNA

CCGCAATGTACACCGAATCAACCCACCTACCACCTATATCACCAAACCTCCCCACCCCACCATGTCTTTCTTTATAAATTTCATGGATGCTTCGCCGTCGGATTCCAAACACAAACTTGGCTAAACCATGGCTGCTCAAATCTCTGGCATTTCTTCCACGTGCTCCACAGCCTCCTGCAAAGACCAGTCTCTCAAACTCGATTTTGATTCACTGTGCTCCAACAGATCAACTTCAATCTCGTTTTCTTCTCAGCTGAACA...

CDS

Download CDS FASTA

1452 bp · TkA03G178260|TK1151|CDS

ATGGCTGCTCAAATCTCTGGCATTTCTTCCACGTGCTCCACAGCCTCCTGCAAAGACCAGTCTCTCAAACTCGATTTTGATTCACTGTGCTCCAACAGATCAACTTCAATCTCGTTTTCTTCTCAGCTGAACACCAATTTGTCAATCAAATCTTTAGAGACTAGAAGAAGGCGTAAGCTCTCTACAATCTGTTCAGCAGTAATATTAGAAAGCAACTCTGAGAAAATGGAACTTGATACGAGTCTGAGCCCTAGAGTCAA...

Protein

Download Protein FASTA

483 aa · TkA03G178260|TK1151|PROTEIN

MAAQISGISSTCSTASCKDQSLKLDFDSLCSNRSTSISFSSQLNTNLSIKSLETRRRRKLSTICSAVILESNSEKMELDTSLSPRVNSVKPSKTVAITDQATALVEAGVPVIRLAAGEPDFDTPSVIAEAGINAIREGYTRYTPNAGTLELRTAICKKLKDENDISYTPDQIVVSNGAKQSILQAILAVCSPGDEVMIPAPFWVSYPEMARLADATPVILPASISENFLLDPKLLEAKLTDKSRLLILCSPSNPTGSVYP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G178260`
TK1151 ID	TkA03G178260
OH-1004 ID	LXL04_007451
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G178260

Location Chr03:45007523-45011695 (+)

Description Similar to Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22250`	Prokaryotic-type aspartate aminotransferase.	Identification of a plant gene encoding glutamate/aspartate-prephenate aminotransferase: the last homeless enzyme of aromatic amino acids biosynthesis.2010 · DOI: 10.1016/j.febslet.2010.09.037

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007451 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006520 amino acid metabolic process Biological Process

GO:0009094 L-phenylalanine biosynthetic process Biological Process

GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity Molecular Function

GO:0008483 transaminase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

GO:0033853 aspartate-prephenate aminotransferase activity Molecular Function

GO:0033854 glutamate-prephenate aminotransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G22250

cte:CT0966

rpr:RP091

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.977

Rank 1 · TkA03G178260 · TK1151

Mitochondrion0.044

Rank 2 · TkA03G178260 · TK1151

Cytoplasm0.024

Rank 3 · TkA03G178260 · TK1151

Peroxisome0.023

Rank 4 · TkA03G178260 · TK1151

Cell membrane0.013

Rank 5 · TkA03G178260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155Aminotran_1_2110-472 aa

PF00266Aminotran_5170-269 aa

PF01041DegT_DnrJ_EryC1172-247 aa

PF01276OKR_DC_1173-223 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G178260	`PF00155`	Aminotran_1_2	110	472	1.3e-76	258.9
TkA03G178260	`PF00266`	Aminotran_5	170	269	0.01	15.5
TkA03G178260	`PF01041`	DegT_DnrJ_EryC1	172	247	0.0076	16.2
TkA03G178260	`PF01276`	OKR_DC_1	173	223	0.12	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIE1`	Arabidopsis thaliana	sp\|Q9SIE1\|PAT_ARATH Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase	77.200%	Swiss-Prot	High

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