TkA03G157190 | RubberDandelionOmics

Gene overview

TkA03G157190

Reference: TK1151 Chr: Chr03 Coordinates: 39872083-39873110 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

933 bp · TkA03G157190|TK1151|cDNA

AAAAGATGAAAACAACCATCTTTGCCGGATTATTTCTTGCCGGAATAATCCTCATCCCGGAACCGGTAGCATCCCAGAATAATAATGCATATAGACCTGGTATAGCGACCAATGATTTCTTTTATGGGATCATGGCCAAGTCTGCAAACGACTGCCCCGGAAGACGTTTCTACACACGTGTGGCGTTTCTTAGAGTCATAAGAGACTACCCACAGTTTGCCAGATCAGGTTCCCTGGATGATTCAAAACGAGAAATCGCA...

CDS

Download CDS FASTA

474 bp · TkA03G157190|TK1151|CDS

ATGATTCAAAACGAGAAATCGCAGCTTTCTTTGCCCATGTTACTCATGACTCATGAGACTGGTCACTTCTGTTACATAGAAGAAATAGATGGTCGTTCAAAGAACTACTGCGATTGGGGGAACAGAGAATACCCATGCGCCCCTAACAAAGGCTACTATGGGAGAGGTCCGCTTCAGATTTCATGGAACTACAACTACGGTTCGGCTGGAAGGAGCCTTGGGTTCGATGGGCTCGGGAACCCAGATGCCGTGGCTAATGA...

Protein

Download Protein FASTA

157 aa · TkA03G157190|TK1151|PROTEIN

MIQNEKSQLSLPMLLMTHETGHFCYIEEIDGRSKNYCDWGNREYPCAPNKGYYGRGPLQISWNYNYGSAGRSLGFDGLGNPDAVANDPMISFKTALWFWMGNVHSDFASGKGFGATIRAINGGECNGGNGDAVRSRVNYYTDYCRQFGVSTGGNVWC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G157190`
TK1151 ID	TkA03G157190
OH-1004 ID	LXL04_007329
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.800
Protein coverage (%)	TK1151 97.452 / OH-1004 56.458 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G157190

Location Chr03:39872083-39873110 (+)

Description Similar to EP3: Endochitinase EP3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54420`	Probably involved in hypersensitive reaction upon Xanthomonas campestris infection.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0493400`	Hydrolyzes chitin and may function in reproductive organs during embryogenesis and seed maturation.	No verified direct reference in this release
`Os04g0494100`	May function in reproductive organs during embryogenesis and seed maturation.	No verified direct reference in this release
`Os02g0605900`	May function in reproductive organs during embryogenesis and seed maturation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007329 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000272 polysaccharide catabolic process Biological Process

GO:0006032 chitin catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0010262 somatic embryogenesis Biological Process

GO:0016998 cell wall macromolecule catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004568 chitinase activity Molecular Function

GO:0008061 chitin binding Molecular Function

KEGG gene cross-reference

ath:AT3G54420

dosa:Os02g0605900

dosa:Os04g0493400

dosa:Os04g0494100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.500

Rank 1 · TkA03G157190 · TK1151

Extracellular0.328

Rank 2 · TkA03G157190 · TK1151

Cytoplasm0.179

Rank 3 · TkA03G157190 · TK1151

Endoplasmic reticulum0.109

Rank 4 · TkA03G157190 · TK1151

Cell membrane0.084

Rank 5 · TkA03G157190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00182Glyco_hydro_1920-102 aa

PF00182Glyco_hydro_19111-157 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G157190	`PF00182`	Glyco_hydro_19	20	102	8.2e-35	121.4
TkA03G157190	`PF00182`	Glyco_hydro_19	111	157	8.2e-35	121.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2U5`	Arabidopsis thaliana	sp\|Q9M2U5\|CHI5_ARATH Endochitinase EP3	65.000%	Swiss-Prot	High
`O04138`	Oryza sativa subsp. japonica	sp\|O04138\|CHI4_ORYSJ Chitinase 4	63.900%	Swiss-Prot	High
`Q7Y1Z0`	Oryza sativa subsp. japonica	sp\|Q7Y1Z0\|CHI5_ORYSJ Chitinase 5	64.500%	Swiss-Prot	High
`Q6K8R2`	Oryza sativa subsp. japonica	sp\|Q6K8R2\|CHI6_ORYSJ Chitinase 6	59.900%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card