RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G127420
Reference: TK1151 Chr: Chr03 Coordinates: 32691377-32693528 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2058 bp · TkA03G127420|TK1151|cDNA

TTTGTTTGCAATTGTTTCCCATAAACGTTGCCCAACATAGATTTGATTTATTCAATACCTTAATGGCGTCTTCTTCAACTTCATTTGTTCACAAGAGCTTTAAGTATGATGTATTTCTGAGTTTCAGGGGCGAAGACACTCGTACGAAATTCGTTGATCATTTTATCATGCTCTTCAACATAAAAGCATTCATACTTATAAGGACGACGAGAATATCAAAAAAGGGAAAAACATCAGTAATGAGCTCATTGGTTCCATCG...

CDS

Download CDS FASTA

1143 bp · TkA03G127420|TK1151|CDS

ATGGATATCCGTATCAAACATGTTGTATCATCTTTAGAAATCGGTTGTGATGATATCCGCATGATTGGGGTCAAGGGGATGGGAGGCGGTGGAAAAACAACGTTAGCAAGAGCTGTTTTTGATCACATATCCTTCAAGTTCGAAGGTAAAAGCTTCATTGAAAATGTCAGAGAAAATGCTTCTTTGTATGGTTTAATGTCGTTGCAAAAACAAATCCTTTCGGATGTCTTAAATGAAGACACCCGTGTAAGTAGTGCTTA...

Protein

Download Protein FASTA

380 aa · TkA03G127420|TK1151|PROTEIN

MDIRIKHVVSSLEIGCDDIRMIGVKGMGGGGKTTLARAVFDHISFKFEGKSFIENVRENASLYGLMSLQKQILSDVLNEDTRVSSAYDAIRRMMYTKKVLVVLDDVDHIDLLEALAGKLNWFKRGSRIIITTRDEQVLVAHQVKIIHDVSLLSDKEAIYLFDRYAFGREIPFQEYKDLSRQVVRYAAGLPLTIRVLGSFLCGKNKLEWIDAIKRLRTIPLKETRKKLELSLIDLEEDYKEMFLDVACILKGWRKDDAIKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G127420
TK1151 IDTkA03G127420
OH-1004 IDLXL04_007150
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.000
Protein coverage (%)TK1151 95.789 / OH-1004 27.639
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G127420
LocationChr03:32691377-32693528 (+)
DescriptionSimilar to SGR2: Phospholipase SGR2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18370 TIR-NB-LRR receptor-like protein involved in plant defense.
Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007150 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009590 detection of gravity Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0009630 gravitropism Biological Process
GO:0009660 amyloplast organization Biological Process
GO:0009959 negative gravitropism Biological Process
GO:0016042 lipid catabolic process Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G31480
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594
Rank 1 · TkA03G127420 · TK1151
Nucleus0.257
Rank 2 · TkA03G127420 · TK1151
Cell membrane0.130
Rank 3 · TkA03G127420 · TK1151
Endoplasmic reticulum0.113
Rank 4 · TkA03G127420 · TK1151
Extracellular0.056
Rank 5 · TkA03G127420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931NB-ARC16-168 aa
PF25199nSTAND_NTPase519-38 aa
PF13191AAA_1620-121 aa
PF13173AAA_1420-131 aa
PF24883NPHP3_N20-44 aa
PF05729NACHT21-137 aa
PF13238AAA_1822-115 aa
PF13401AAA_2223-115 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G127420PF00931NB-ARC161685.2e-2382.2
TkA03G127420PF25199nSTAND_NTPase519380.001119.6
TkA03G127420PF13191AAA_16201210.009117.2
TkA03G127420PF13173AAA_14201310.01715.9
TkA03G127420PF24883NPHP3_N20440.1213.3
TkA03G127420PF05729NACHT211370.0009219.8
TkA03G127420PF13238AAA_18221150.02216.0
TkA03G127420PF13401AAA_22231150.005817.7
TkA03G127420PF00004AAA261240.01216.8
TkA03G127420PF23282WHD_ROQ139672.3e-1454.0
TkA03G127420PF17331GFD168820.04214.8
TkA03G127420PF25199nSTAND_NTPase5791370.001119.6
TkA03G127420PF24883NPHP3_N861330.1213.3
TkA03G127420PF23282WHD_ROQ1981112.3e-1454.0
TkA03G127420PF17331GFD11952100.04214.8
TkA03G127420PF23282WHD_ROQ12363092.3e-1454.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JWM0Arabidopsis thalianasp|F4JWM0|DSC2_ARATH Disease resistance-like protein DSC234.900%Swiss-ProtMedium

JBrowse

View in Genome Browser