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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G120360
Reference: TK1151 Chr: Chr03 Coordinates: 30793815-30795543 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1665 bp · TkA03G120360|TK1151|cDNA

ATTCGATTTCAAAAAGATCACTTTAAGGCTTTAAGCAACCAATTAGATTCTTTTTGTTTCTATGGTGATCCACTAGCTCTTTAATATTCAACTCTAATTCAACCCTCGTAATGCTTTCTGTGAATAAGGCATGGAGAACTGAAGAACAACACTAATTATTGGATTCAGCAAATGTTCCGGCAGCTTATCGGTCAACTTCAAGACTTCGTAGATCTCCATGGTTTTCCTCCTCCACCGGCTCCAATTGCTCCGCCGTCATA...

CDS

Download CDS FASTA

1263 bp · TkA03G120360|TK1151|CDS

ATGTTCCGGCAGCTTATCGGTCAACTTCAAGACTTCGTAGATCTCCATGGTTTTCCTCCTCCACCGGCTCCAATTGCTCCGCCGTCATATTTCTTTCATCCTCAACCTCCGACGAAACTTCCACCGCCACCGCCGTCGCCTCTTCATGACGACAGGAAATCAAAGAGAACTCAAAAAGAGCCAACACAAATCGAAACTTCTGATTTAAACGAGACCATGGAAGAGATCTGGAGGTATTTTCCCGAAGACCTATACGAGGC...

Protein

Download Protein FASTA

420 aa · TkA03G120360|TK1151|PROTEIN

MFRQLIGQLQDFVDLHGFPPPPAPIAPPSYFFHPQPPTKLPPPPPSPLHDDRKSKRTQKEPTQIETSDLNETMEEIWRYFPEDLYEAVIARLPIAAFFRFRSVCHNWNSLLTSDGFTRQCSQFRPPQPWFYTIAHNNVNSGAMYDPVSRKWHHPIAPKIPTTTIVFPVASAGGLLCFLDIGHRSFYVCNPLTNSIKELPTRSAKVWQRVAVGMMSETPATGTGGYKIMWLASNGEYEVYNSKTDTWQRLGTMPECIKLPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G120360
TK1151 IDTkA03G120360
OH-1004 IDLXL04_025758
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G120360
LocationChr03:30793815-30795543 (+)
DescriptionSimilar to FBX6: F-box only protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g27340 F-box only protein 6. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009908 flower development Biological Process
GO:0009933 meristem structural organization Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010928 regulation of auxin mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0035195 miRNA-mediated post-transcriptional gene silencing Biological Process
GO:0060776 simple leaf morphogenesis Biological Process
KEGG gene cross-reference
ath:AT1G27340
ath:AT1G30950
ath:AT3G61590
ath:AT4G33160
ath:AT5G15710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.535
Rank 1 · TkA03G120360 · TK1151
Cytoplasm0.386
Rank 2 · TkA03G120360 · TK1151
Cell membrane0.133
Rank 3 · TkA03G120360 · TK1151
Endoplasmic reticulum0.089
Rank 4 · TkA03G120360 · TK1151
Plastid0.047
Rank 5 · TkA03G120360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24750b-prop_At3g26010-like58-89 aa
PF00646F-box80-118 aa
PF12937F-box-like81-114 aa
PF01344Kelch_1135-152 aa
PF07646Kelch_2142-152 aa
PF00646F-box147-152 aa
PF12937F-box-like147-153 aa
PF08268FBA_3158-401 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G120360PF24750b-prop_At3g26010-like58892.1e-0834.4
TkA03G120360PF00646F-box801181.4e-0628.7
TkA03G120360PF12937F-box-like811140.1712.4
TkA03G120360PF01344Kelch_11351524.6e-0523.6
TkA03G120360PF07646Kelch_21421520.0006120.4
TkA03G120360PF00646F-box1471521.4e-0628.7
TkA03G120360PF12937F-box-like1471530.1712.4
TkA03G120360PF08268FBA_31584010.0001122.0
TkA03G120360PF24750b-prop_At3g26010-like1653452.1e-0834.4
TkA03G120360PF03478Beta-prop_KIB1-41673545.2e-1040.0
TkA03G120360PF07734FBA_11683795.8e-1142.7
TkA03G120360PF07646Kelch_21831990.0006120.4
TkA03G120360PF24681Kelch_KLHDC2_KLHL20_DRC71852520.0004220.4
TkA03G120360PF07646Kelch_22232530.0006120.4
TkA03G120360PF24996NANM2362650.01814.6
TkA03G120360PF01344Kelch_12372534.6e-0523.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZK1Arabidopsis thalianasp|Q9FZK1|FBX6_ARATH F-box only protein 656.500%Swiss-ProtHigh

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