Gene Card
Gene overview
cDNA / CDS / Protein Sequences
790 bp · TkA03G116620|TK1151|cDNA
AGAAGAGAGACTTATTACGAAGATAGAGATGTTAACAGAAATCTGAGATATAAATCTGTACTGCCGCCATCTCCCGTCACCAACTGTCGGTACGTGTCCACTCGTGAGCCCTAATTTGGTTTAGGTGACTTGCGACCCCTGAATTTCTGTTCCATTGATCCCGAGTTAGACAAGGCAAGGTTGAATTTGGTGATAATTATATTCAAGAATCTCGCTCAGTCAATGGCTCATAATCAATTGACTCACAATCAGGTTGAGCA...
402 bp · TkA03G116620|TK1151|CDS
ATGGCTCATAATCAATTGACTCACAATCAGGTTGAGCATCTTGCTCACCGGAAACATTTTCCTTCGTATTGGTCCATGGAAGTTGTGAATGTTGCATTAGAGAATGGTGATGTGTTCAAAACAATGTTTCGAGTGAATGCACATAATCGGGTTGAGGCCTATTACAAAATCGATGGATTACCGATTGATGTTCTTATTAGTGGATTCTATAGCCAAAATAGAGCAGTAAAAGGTGACATCGTTGCAATCAAAGTAGACCC...
Protein
Download Protein FASTA133 aa · TkA03G116620|TK1151|PROTEIN
MAHNQLTHNQVEHLAHRKHFPSYWSMEVVNVALENGDVFKTMFRVNAHNRVEAYYKIDGLPIDVLISGFYSQNRAVKGDIVAIKVDPFSSWTKMKGSVEASPEKLLHNTKMVAYPQGPNDMKSLNRILDDTTM
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G116620 |
|---|---|
| TK1151 ID | TkA03G116620 |
| OH-1004 ID | LXL04_030330 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 77.400 |
| Protein coverage (%) | TK1151 99.248 / OH-1004 13.430Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G116620 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:29816077-29819717 (-) | |||||||||
| Description | Similar to SOV: DIS3-like exonuclease 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000278 mitotic cell cycle Biological Process GO:0000956 nuclear-transcribed mRNA catabolic process Biological Process GO:0006402 mRNA catabolic process Biological Process GO:0008285 negative regulation of cell population proliferation Biological Process GO:0010587 miRNA catabolic process Biological Process GO:0019827 stem cell population maintenance Biological Process GO:0051301 cell division Biological Process GO:0051306 mitotic sister chromatid separation Biological Process GO:1990074 polyuridylation-dependent mRNA catabolic process Biological Process GO:0000932 P-body Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G77680 hsa:129563 mmu:208718 xtr:780265 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17216Rrp44_CSD120-95 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G116620 | PF17216 | Rrp44_CSD1 | 20 | 95 | 2.3e-06 | 28.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.