TkA03G110060 | RubberDandelionOmics

Gene overview

TkA03G110060

Reference: TK1151 Chr: Chr03 Coordinates: 28142767-28144121 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1002 bp · TkA03G110060|TK1151|cDNA

ATGAAACCCCGCCTACACCCAACCCCAACCCTCTTCGCGATCACAGTCATTATAGCCATTGTCGTCTGTTTTCCAGCTATCTCGTGCAAAAAAATGAGTCCATATGATGTTTGTGGCGAGCCGGTCCATTGTGGAGACATTCCATTACAGTACCCATTTTGGGGTTCCGATCGTCCGGCCTACTGCGACCACCCGGGTTTTGAGCTGGCCTGCGGACCTAATATTTCCATACTCACTTACCAATCACTATACTATCAAGT...

CDS

Download CDS FASTA

1002 bp · TkA03G110060|TK1151|CDS

ATGAAACCCCGCCTACACCCAACCCCAACCCTCTTCGCGATCACAGTCATTATAGCCATTGTCGTCTGTTTTCCAGCTATCTCGTGCAAAAAAATGAGTCCATATGATGTTTGTGGCGAGCCGGTCCATTGTGGAGACATTCCATTACAGTACCCATTTTGGGGTTCCGATCGTCCGGCCTACTGCGACCACCCGGGTTTTGAGCTGGCCTGCGGACCTAATATTTCCATACTCACTTACCAATCACTATACTATCAAGT...

Protein

Download Protein FASTA

333 aa · TkA03G110060|TK1151|PROTEIN

MKPRLHPTPTLFAITVIIAIVVCFPAISCKKMSPYDVCGEPVHCGDIPLQYPFWGSDRPAYCDHPGFELACGPNISILTYQSLYYQVLDINNSTQIVKIARDDLVTHFCRPYINNTSFNTTLFSFVKSEQENLSLYYHCKGDTEKIPSVIDFDESDNSDVTNMDCEENIVVPVSEFLARQLAFTTASGTDLRASLMGGFDLRWMAKNEECDRCIRSNGRCRSNSTSPELFACYYDTGCSCFLAIVMILLFVIHHQRNKLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G110060`
TK1151 ID	TkA03G110060
OH-1004 ID	LXL04_007066
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	44.900
Protein coverage (%)	TK1151 71.171 / OH-1004 25.407 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G110060

Location Chr03:28142767-28144121 (-)

Description Similar to LRK10L-1.3: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g66920`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4.	No verified direct reference in this release
`At5g38250`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3.	No verified direct reference in this release
`At5g38240`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2.	No verified direct reference in this release
`At1g69910`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007066 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0042631 cellular response to water deprivation Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G18390

ath:AT1G66880

ath:AT5G38210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.800

Rank 1 · TkA03G110060 · TK1151

Endoplasmic reticulum0.099

Rank 2 · TkA03G110060 · TK1151

Cytoplasm0.089

Rank 3 · TkA03G110060 · TK1151

Nucleus0.068

Rank 4 · TkA03G110060 · TK1151

Extracellular0.046

Rank 5 · TkA03G110060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind38-101 aa

PF13947GUB_WAK_bind147-168 aa

PF14380WAK_assoc153-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G110060	`PF13947`	GUB_WAK_bind	38	101	2.8e-15	57.2
TkA03G110060	`PF13947`	GUB_WAK_bind	147	168	2.8e-15	57.2
TkA03G110060	`PF14380`	WAK_assoc	153	235	1.6e-14	55.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HQ22`	Arabidopsis thaliana	sp\|F4HQ22\|LRL24_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4	27.000%	Swiss-Prot	Low
`F4KA51`	Arabidopsis thaliana	sp\|F4KA51\|LRL23_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3	24.600%	Swiss-Prot	Low
`F4KA50`	Arabidopsis thaliana	sp\|F4KA50\|LRL22_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2	26.100%	Swiss-Prot	Low
`F4I3V3`	Arabidopsis thaliana	sp\|F4I3V3\|LRL15_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5	22.300%	Swiss-Prot	Low

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