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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G108650
Reference: TK1151 Chr: Chr03 Coordinates: 27811683-27815490 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2375 bp · TkA03G108650|TK1151|cDNA

AAAATTCTGAAATTCACATTAAACCAACCGAACACTTCCTCCTCTTTGCATCAATCAACTTCCTTTTTTATTCATTCGTCATTCATTATTCAAAAATATTCATCCCTTCCTCTCCTTCTACAGTTCTACTCCGACTACCATGAAACGCCGTTCAGATCCGTCCCCATCCCGGTTGTCGTTCCCGGTGATTCTAGCCATCGTTGTCTGTTTTCCGGCTATCTCGTGCCAACAATCCCGGCCGTTTGATGTTTGTGGCGAAT...

CDS

Download CDS FASTA

2010 bp · TkA03G108650|TK1151|CDS

ATGAAACGCCGTTCAGATCCGTCCCCATCCCGGTTGTCGTTCCCGGTGATTCTAGCCATCGTTGTCTGTTTTCCGGCTATCTCGTGCCAACAATCCCGGCCGTTTGATGTTTGTGGCGAATCGGTCGAGTGCGGAGAACTCCGATTAGAGTACCCGTTTTGGGGGTTAACCCGTCCGGTATACTGCGGCCATCCTGCTTTTCAGCTCACCTGTCAATCTAATGTTCCGGTATTCAATTACGAATCAGTAAACTACCGAGT...

Protein

Download Protein FASTA

669 aa · TkA03G108650|TK1151|PROTEIN

MKRRSDPSPSRLSFPVILAIVVCFPAISCQQSRPFDVCGESVECGELRLEYPFWGLTRPVYCGHPAFQLTCQSNVPVFNYESVNYRVLDTDATTQTMIIARNDLWNTFCPQNLYNTTYNSTLFNGDNFGQRNVSLYYNCSSSIPGVQLGSNRFSCNVNESQSDGYFLIRTDLTANVPNFLCESYIDVPVNQTSAGILGAGSATTDDLRSALTAGFNLRWAANDDECSRCIRSDGQCGSNSDLFTCYCATGNFSLTCDNSN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G108650
TK1151 IDTkA03G108650
OH-1004 IDLXL04_007066
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.800
Protein coverage (%)TK1151 99.701 / OH-1004 67.785
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G108650
LocationChr03:27811683-27815490 (+)
DescriptionSimilar to LRK10L-1.3: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g38210 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.3. No verified direct reference in this release
At1g66880 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4. No verified direct reference in this release
At1g18390 Probable receptor-like serine/threonine-protein kinase involved in abscisic acid (ABA) signaling.
The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance.2015 · DOI: 10.1007/s00299-014-1724-2
At1g25390 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1. No verified direct reference in this release
At2g23450 Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007066 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042631 cellular response to water deprivation Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048573 photoperiodism, flowering Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030247 polysaccharide binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G18390
ath:AT1G66880
ath:AT5G38210
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.859
Rank 1 · TkA03G108650 · TK1151
Endoplasmic reticulum0.082
Rank 2 · TkA03G108650 · TK1151
Cytoplasm0.080
Rank 3 · TkA03G108650 · TK1151
Nucleus0.052
Rank 4 · TkA03G108650 · TK1151
Lysosome / Vacuole0.030
Rank 5 · TkA03G108650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22852SoxE_N14-23 aa
PF13947GUB_WAK_bind38-101 aa
PF23673DUF715465-122 aa
PF14380WAK_assoc155-248 aa
PF13947GUB_WAK_bind246-260 aa
PF15345TMEM51258-340 aa
PF22852SoxE_N269-291 aa
PF23673DUF7154313-355 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G108650PF22852SoxE_N14230.9610.1
TkA03G108650PF13947GUB_WAK_bind381016.5e-1659.2
TkA03G108650PF23673DUF7154651221.510.0
TkA03G108650PF14380WAK_assoc1552484.8e-1556.8
TkA03G108650PF13947GUB_WAK_bind2462606.5e-1659.2
TkA03G108650PF15345TMEM512583400.05514.0
TkA03G108650PF22852SoxE_N2692910.9610.1
TkA03G108650PF23673DUF71543133551.510.0
TkA03G108650PF00069Pkinase3706421.3e-48166.4
TkA03G108650PF07714PK_Tyr_Ser-Thr3736444.7e-50171.0
TkA03G108650PF03109ABC13794213.9e-0523.6
TkA03G108650PF12330Haspin_kinase4084640.000819.2
TkA03G108650PF03109ABC14355223.9e-0523.6
TkA03G108650PF12330Haspin_kinase4665210.000819.2
TkA03G108650PF14531Kinase-like4725340.000320.9
TkA03G108650PF06293Kdo4765150.2911.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VYG0Arabidopsis thalianasp|Q8VYG0|LRL13_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.345.900%Swiss-ProtMedium
F4HQ17Arabidopsis thalianasp|F4HQ17|LRL14_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.445.600%Swiss-ProtMedium
P0C5E2Arabidopsis thalianasp|P0C5E2|LRL12_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.245.600%Swiss-ProtMedium
Q9C6K9Arabidopsis thalianasp|Q9C6K9|LRL11_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.166.000%Swiss-ProtLow
Q8RY67Arabidopsis thalianasp|Q8RY67|WAKLO_ARATH Wall-associated receptor kinase-like 1448.000%Swiss-ProtLow

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