RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G074280
Reference: TK1151 Chr: Chr03 Coordinates: 19059087-19065428 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3392 bp · TkA03G074280|TK1151|cDNA

GTTCACCTCCAAAGGACTATTACGTACAAATTGACACAGGAAGTGATGTGTTATGGGTCAGTTGCAATCATTGCAATGGTTGCCCAACCTCAAGCGGAGTACAAATTCCGATATCTTTCTATGACCCTTCAAGCTCATCAACGTCGTGCCAACCAAACGGATTATATATACCATGTTTTTGTAGTTTTTGTCCGCAGCGGACCAAGACAATTTTCAAACTGAAAGCCACGTATTATAATTCCGCTCAAACCTTTTCCCTT...

CDS

Download CDS FASTA

2700 bp · TkA03G074280|TK1151|CDS

ATGTCGTCGCCGAAGCTCCCTCTTCCATCGTGTTCCGCCGCCGGCCGATCCGAGTCTCCGGATGCATCTACGATTGTGGGAGTAGAAGGAGCAACTATTCCTCCTGCAGAAATATCACTGGTAATCGACTCATTCAAGAAGAACGTTGATGCTGATCGTTGTGTTTATATCATGAAAAGAATGGAAGAAAACAGAATCAAGTTGGCTGAAGTAACCAGCAACCACCACAAGTTATCAACAGAAAGACGAAACCTAAAGAC...

Protein

Download Protein FASTA

899 aa · TkA03G074280|TK1151|PROTEIN

MSSPKLPLPSCSAAGRSESPDASTIVGVEGATIPPAEISLVIDSFKKNVDADRCVYIMKRMEENRIKLAEVTSNHHKLSTERRNLKTSGTDVDLLTKRQKDAIDMQNGVNANNGDSDSSSSQEDGHASAILLGSSIAVKNAVRPIKLPEVNKLPPYTTWIFLDRNQRMTEDQSVLGRRRIYYDQNGGEALICSDSEEEAIDEEEEKKEFVESEDYIIKMTIQQLGLSDPVLDLLAQRLTRKPSELKARYEVLVNRENAIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G074280
TK1151 IDTkA03G074280
OH-1004 IDLXL04_006805
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.000
Protein coverage (%)TK1151 97.442 / OH-1004 95.218
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G074280
LocationChr03:19059087-19065428 (+)
DescriptionSimilar to CLF: Histone-lysine N-methyltransferase CLF
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23380 Polycomb group (PcG) protein.
Genetic analysis of incurvata mutants reveals three independent genetic operations at work in Arabidopsis leaf morphogenesis.2000 · DOI: 10.1093/genetics/156.3.1363

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0275500 Polycomb group (PcG) protein.
The rice enhancer of zeste [E(z)] genes SDG711 and SDG718 are respectively involved in long day and short day signaling to mediate the accurate photoperiod control of flowering time.2014 · DOI: 10.3389/fpls.2014.00591
Os03g0307800 Polycomb group (PcG) protein.
The rice enhancer of zeste [E(z)] genes SDG711 and SDG718 are respectively involved in long day and short day signaling to mediate the accurate photoperiod control of flowering time.2014 · DOI: 10.3389/fpls.2014.00591
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006805 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009294 DNA-mediated transformation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009908 flower development Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010048 vernalization response Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031507 heterochromatin formation Biological Process
KEGG gene cross-reference
ath:AT2G23380
dosa:Os03g0307800
dosa:Os06g0275500
osa:4340748
zma:541954
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964
Rank 1 · TkA03G074280 · TK1151
Cytoplasm0.098
Rank 2 · TkA03G074280 · TK1151
Cell membrane0.023
Rank 3 · TkA03G074280 · TK1151
Mitochondrion0.012
Rank 4 · TkA03G074280 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA03G074280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00856SET198-229 aa
PF25996HTH_CLF_N209-252 aa
PF21358Ezh2_MCSS280-303 aa
PF03638TCR298-300 aa
PF03638TCR651-684 aa
PF18264preSET_CXC662-679 aa
PF03638TCR686-717 aa
PF18264preSET_CXC687-718 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G074280PF00856SET1982291.1e-1971.6
TkA03G074280PF25996HTH_CLF_N2092521.1e-1867.3
TkA03G074280PF21358Ezh2_MCSS2803032.9e-0627.6
TkA03G074280PF03638TCR2983000.001120.0
TkA03G074280PF03638TCR6516840.001120.0
TkA03G074280PF18264preSET_CXC6626792.9e-0731.6
TkA03G074280PF03638TCR6867170.001120.0
TkA03G074280PF18264preSET_CXC6877182.9e-0731.6
TkA03G074280PF00856SET7608631.1e-1971.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93831Arabidopsis thalianasp|P93831|CLF_ARATH Histone-lysine N-methyltransferase CLF55.800%Swiss-ProtHigh
Q5VN06Oryza sativa subsp. japonicasp|Q5VN06|CLF_ORYSJ Histone-lysine N-methyltransferase CLF54.300%Swiss-ProtHigh
Q10MI4Oryza sativa subsp. japonicasp|Q10MI4|EZ1_ORYSJ Histone-lysine N-methyltransferase EZ146.300%Swiss-ProtMedium

JBrowse

View in Genome Browser