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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G043450
Reference: TK1151 Chr: Chr03 Coordinates: 11414826-11425889 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2600 bp · TkA03G043450|TK1151|cDNA

CCAACACACTCTTTAAACACCGAGTAAACTTTCGGTTCATCAACATGTTCTTCATATAAAGTAACTTGATTAATTCTTTAAGTTCTTATAACATATTTTCTGCAAGTTAATGGTTTAAGTTATTGCGAAATCTTATGTTTGATAAGATTAAGGGGCTTTGTGAATCTTGTGAAATGGGGAACAAGAAACATTTGGATTGGACAAGCCGGTCGATTATGTTCAAAGGAGGATTTTCCTTCGTGAAGAAAGATGGTTTATTG...

CDS

Download CDS FASTA

2076 bp · TkA03G043450|TK1151|CDS

ATGTTTGATAAGATTAAGGGGCTTTGTGAATCTTGTGAAATGGGGAACAAGAAACATTTGGATTGGACAAGCCGGTCGATTATGTTCAAAGGAGGATTTTCCTTCGTGAAGAAAGATGGTTTATTGAAATCTTGTGAAATGGGGAAGAAAAAGCATTTGGATTGGACAAGCCGATCGATCATCTCGTCTGGAGGTGATAGAGTTCCTCTAATCAGAAAAGAGGTCAAGAGAAATGATAATGAAATCGGGTCGTCAAATGG...

Protein

Download Protein FASTA

691 aa · TkA03G043450|TK1151|PROTEIN

MFDKIKGLCESCEMGNKKHLDWTSRSIMFKGGFSFVKKDGLLKSCEMGKKKHLDWTSRSIISSGGDRVPLIRKEVKRNDNEIGSSNGPATDLEYGDAVQAANVGFSRVLLLAKPDAGRLVIATIALLIASTSSLLIPSFGGRIIDIVSRDIKTPEEQTEALNAVKDTILAVVLVVVVGSLSTALRAWLFSSASERVVARLRKDLFSHLMQQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLTTAFIGLCFM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G043450
TK1151 IDTkA03G043450
OH-1004 IDLXL04_006505
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)94.000
Protein coverage (%)TK1151 98.698 / OH-1004 99.846
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G043450
LocationChr03:11414826-11425889 (-)
DescriptionSimilar to ABCB25: ABC transporter B family member 25
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g39040 Probably involved in redistribution of internalized aluminum.
Arabidopsis ALS1 encodes a root tip and stele localized half type ABC transporter required for root growth in an aluminum toxic environment.2007 · DOI: 10.1007/s00425-006-0452-4

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0755100 Metal transporter involved in the sequestration of aluminum into vacuoles, which is required for cellular detoxification of aluminum.
A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04837.x
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006505 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006783 heme biosynthetic process Biological Process
GO:0006839 mitochondrial transport Biological Process
GO:0006935 chemotaxis Biological Process
GO:0006972 hyperosmotic response Biological Process
GO:0010044 response to aluminum ion Biological Process
GO:0034514 mitochondrial unfolded protein response Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0070455 positive regulation of heme biosynthetic process Biological Process
GO:0090374 oligopeptide export from mitochondrion Biological Process
GO:0140982 detoxification of aluminum ion Biological Process
GO:0170037 export from the mitochondrion Biological Process
GO:1902602 aluminum ion transmembrane transport Biological Process
KEGG gene cross-reference
ath:AT5G39040
ddi:DDB_G0293416
dosa:Os03g0755100
hsa:23456
mmu:56199
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.182
Rank 1 · TkA03G043450 · TK1151
Plastid0.162
Rank 2 · TkA03G043450 · TK1151
Endoplasmic reticulum0.151
Rank 3 · TkA03G043450 · TK1151
Peroxisome0.121
Rank 4 · TkA03G043450 · TK1151
Mitochondrion0.107
Rank 5 · TkA03G043450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane119-394 aa
PF18895T4SS_pilin153-184 aa
PF13401AAA_22181-211 aa
PF02463SMC_N217-250 aa
PF18895T4SS_pilin241-261 aa
PF00005ABC_tran275-309 aa
PF09818ABC_ATPase336-361 aa
PF00005ABC_tran462-612 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G043450PF00664ABC_membrane1193942.8e-61208.3
TkA03G043450PF18895T4SS_pilin1531840.02515.5
TkA03G043450PF13401AAA_221812110.0116.9
TkA03G043450PF02463SMC_N2172502.2e-0524.7
TkA03G043450PF18895T4SS_pilin2412610.02515.5
TkA03G043450PF00005ABC_tran2753099.5e-33114.4
TkA03G043450PF09818ABC_ATPase3363610.02414.4
TkA03G043450PF00005ABC_tran4626129.5e-33114.4
TkA03G043450PF00270DEAD4716290.01815.5
TkA03G043450PF13521AAA_284744950.1313.2
TkA03G043450PF13401AAA_224756380.0116.9
TkA03G043450PF09818ABC_ATPase4754940.02414.4
TkA03G043450PF07728AAA_54754980.1412.9
TkA03G043450PF00004AAA4764920.01316.7
TkA03G043450PF13604AAA_304765040.06713.7
TkA03G043450PF02463SMC_N5416552.2e-0524.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WML0Arabidopsis thalianasp|Q0WML0|AB27B_ARATH ABC transporter B family member 2778.700%Swiss-ProtHigh
Q9FNU2Oryza sativa subsp. japonicasp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 2577.100%Swiss-ProtHigh

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