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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G037180
Reference: TK1151 Chr: Chr03 Coordinates: 9822545-9824850 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2208 bp · TkA03G037180|TK1151|cDNA

ACCCTAGAAAACGTATCTGACCTCAAACCCCTTTTTCCATCAGCCGAAAACCTCTCGTGCATCCTAGAATTCCAAACCAGCAATGAGAAATCAATGGCGTCTCCTCCTTCAACGATGCAAACCAGTTTCCGAGCTTCAATTCGAGTTTCCCACGATTATTCACATCGTCATCTGAACTCGCTGTTGAACAAAATAAAGCCACGGATCAATCCGCCATTACATCAACCTTGATCGAGCTATATTCGGATCCAATCAAAAGC...

CDS

Download CDS FASTA

942 bp · TkA03G037180|TK1151|CDS

ATGCTCGAATTGAGGTCCAAACCCGACCTTACTAGCACTGGTGATGTTATCAAGCTTTTTGAAAACCGCGGATCGGAACCTAAAGCTGCTAAGGCATTCTACGATTGGGTTATGTCAAAGGAAAGCGATAATTTGAGCTCGAATTCATGCAATCGGTTGTTAGGTATGCTGGGAGCAAACGGATTAGTGAAGGAGTTTTGGGATTCGGTTGATTTCATGAAGAAGAAAGGGTATGGAGTGAAGAAAGGTGCGTCTGTTAG...

Protein

Download Protein FASTA

313 aa · TkA03G037180|TK1151|PROTEIN

MLELRSKPDLTSTGDVIKLFENRGSEPKAAKAFYDWVMSKESDNLSSNSCNRLLGMLGANGLVKEFWDSVDFMKKKGYGVKKGASVRAMAKFEEEGLKDEVQKLKDLFALGSIDASIEKLSSKVSKIIQQTPWGDDVETKLQELGAVYSPDLVKMVLENLGSDPNKAVIFFRWIQESGLYKHDETTYNAIAKELAREDYIDKFWRVIDEMRTSGYDMNKSTYIQILNKFVRKKMLKDAVDLYEFSMNGNIKPSIQDCTFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G037180
TK1151 IDTkA03G037180
OH-1004 IDLXL04_006443
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.200
Protein coverage (%)TK1151 91.054 / OH-1004 44.255
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G037180
LocationChr03:9822545-9824850 (+)
DescriptionSimilar to At3g02490: Pentatricopeptide repeat-containing protein At3g02490, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02490 Pentatricopeptide repeat-containing protein At3g02490, mitochondrial. No verified direct reference in this release
At5g15980 Small ribosomal subunit protein mS81 (rPPR8). No verified direct reference in this release
At3g48250 Pentatricopeptide repeat-containing protein At3g48250, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008380 RNA splicing Biological Process
GO:0042793 plastid transcription Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74850
ath:AT3G02490
ath:AT3G06920
ath:AT3G48250
ath:AT5G15980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.733
Rank 1 · TkA03G037180 · TK1151
Plastid0.183
Rank 2 · TkA03G037180 · TK1151
Nucleus0.064
Rank 3 · TkA03G037180 · TK1151
Cytoplasm0.042
Rank 4 · TkA03G037180 · TK1151
Cell membrane0.013
Rank 5 · TkA03G037180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02919Topoisom_I_N19-30 aa
PF23276TPR_2438-80 aa
PF02919Topoisom_I_N44-121 aa
PF13812PPR_348-76 aa
PF13041PPR_249-77 aa
PF01535PPR49-77 aa
PF04358DsrC62-110 aa
PF14848HU-DNA_bdg66-95 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G037180PF02919Topoisom_I_N19300.1212.6
TkA03G037180PF23276TPR_2438800.0001422.5
TkA03G037180PF02919Topoisom_I_N441210.1212.6
TkA03G037180PF13812PPR_348760.005717.4
TkA03G037180PF13041PPR_249771e-0939.1
TkA03G037180PF01535PPR49772.5e-0524.9
TkA03G037180PF04358DsrC621100.002818.8
TkA03G037180PF14848HU-DNA_bdg66950.0614.0
TkA03G037180PF13041PPR_21631961e-0939.1
TkA03G037180PF23276TPR_241632430.0001422.5
TkA03G037180PF29070MSC6_N1813002.2e-0524.4
TkA03G037180PF17177PPR_long1812660.007216.4
TkA03G037180PF13041PPR_21832301e-0939.1
TkA03G037180PF04358DsrC1832390.002818.8
TkA03G037180PF01535PPR1862142.5e-0524.9
TkA03G037180PF13812PPR_31861900.005717.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M891Arabidopsis thalianasp|Q9M891|PP208_ARATH Pentatricopeptide repeat-containing protein At3g02490, mitochondrial44.600%Swiss-ProtMedium
Q8LPF1Arabidopsis thalianasp|Q8LPF1|PP387_ARATH Small ribosomal subunit protein mS81 (rPPR8)41.100%Swiss-ProtMedium
Q9STK5Arabidopsis thalianasp|Q9STK5|PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250, chloroplastic32.600%Swiss-ProtMedium

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