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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G037080
Reference: TK1151 Chr: Chr03 Coordinates: 9790735-9794442 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1951 bp · TkA03G037080|TK1151|cDNA

TCTGTTTATCTGCTAGCTGCCGTTTGTATCTTAGGACGCATAATCCTTTATCAAATTCATATCAATCGGTGGTTTGTTAGCTCGGCATTCAACACCCGCCATAGCCGAGCTCGGAGGTACGTTTGCTATTTCCAGTTCTCACAATTAAAACGTGCCCTAAGCTTTAAAAGATGGATGAAATTATTGAAAACAAAGACATCGATCTGGAAACTGAAGAAAACGATGATTTCAAAAGACAATTATGGAGAAAATTTCGCCCA...

CDS

Download CDS FASTA

1608 bp · TkA03G037080|TK1151|CDS

ATGGATGAAATTATTGAAAACAAAGACATCGATCTGGAAACTGAAGAAAACGATGATTTCAAAAGACAATTATGGAGAAAATTTCGCCCAAAGCTTTGGTTTTCATCCATTTGGAAGAAATATTCTCTAGAATCGAAGCTAAATAACATCAAAACATTCTTGAAGATGAACATCATTCCCGCTTCTATCTCTCTAGCAATGGGAATCTGTTACCTCCTCTTGAAATCAAAGGGGCAAAAATGTAAAGTTGTTCCATATTC...

Protein

Download Protein FASTA

535 aa · TkA03G037080|TK1151|PROTEIN

MDEIIENKDIDLETEENDDFKRQLWRKFRPKLWFSSIWKKYSLESKLNNIKTFLKMNIIPASISLAMGICYLLLKSKGQKCKVVPYSDLLKGLQDGSVTRVQFKENSRSIMYNTNPQASQSTKIVNKLKSHNDANFKEMVASFLAKLSRKHESLSLTLTESNSKVLDFEEMKREKYNHGWQFSTRYIDDDYRELLHLMKEKGTTYGLDPEPFYVSGGRRVFSTLLNQAPSWAMLYMVSLGLGGGGSIARKPSKNDAVTFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G037080
TK1151 IDTkA03G037080
OH-1004 IDLXL04_006435
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.100
Protein coverage (%)TK1151 100.000 / OH-1004 99.814
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G037080
LocationChr03:9790735-9794442 (-)
DescriptionSimilar to FTSHI3: Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02450 Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006435 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0004176 ATP-dependent peptidase activity Molecular Function
GO:0004222 metalloendopeptidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G02450
bph:Bphy_6007
cyb:CYB_0631
tro:trd_A0442
ttr:Tter_0172
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.382
Rank 1 · TkA03G037080 · TK1151
Plastid0.268
Rank 2 · TkA03G037080 · TK1151
Cytoplasm0.152
Rank 3 · TkA03G037080 · TK1151
Nucleus0.096
Rank 4 · TkA03G037080 · TK1151
Endoplasmic reticulum0.092
Rank 5 · TkA03G037080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06480FtsH_ext58-205 aa
PF06068TIP4995-119 aa
PF13191AAA_1699-149 aa
PF08050Tet_res_leader100-107 aa
PF12775AAA_7111-146 aa
PF20720nSTAND3117-174 aa
PF13521AAA_28122-157 aa
PF24883NPHP3_N130-172 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G037080PF06480FtsH_ext582051.1e-0526.3
TkA03G037080PF06068TIP49951190.0003620.6
TkA03G037080PF13191AAA_16991493.9e-0731.5
TkA03G037080PF08050Tet_res_leader1001073.18.4
TkA03G037080PF12775AAA_71111460.0813.2
TkA03G037080PF20720nSTAND31171742.1e-0525.0
TkA03G037080PF13521AAA_281221570.0002721.9
TkA03G037080PF24883NPHP3_N1301720.05114.5
TkA03G037080PF14532Sigma54_activ_21371550.1912.8
TkA03G037080PF13173AAA_141411670.08413.6
TkA03G037080PF08050Tet_res_leader1501583.18.4
TkA03G037080PF08050Tet_res_leader1711773.18.4
TkA03G037080PF13173AAA_142532760.08413.6
TkA03G037080PF13191AAA_162562743.9e-0731.5
TkA03G037080PF25199nSTAND_NTPase52733170.1512.6
TkA03G037080PF02367TsaE2873190.1213.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M895Arabidopsis thalianasp|Q9M895|FTSI3_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic54.000%Swiss-ProtHigh

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