TkA03G031080 | RubberDandelionOmics

Gene overview

TkA03G031080

Reference: TK1151 Chr: Chr03 Coordinates: 8347045-8347524 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

417 bp · TkA03G031080|TK1151|cDNA

ATGCCTGCGCATTGCTCTACGCAACTGCGAATACCACCTGCGTTTCTCAAGTACTTTGGGGATTCCTTACCCTTCAAGTTTACCCTTCAAACTTCTGCAACAAACTCATGGGAGGTACACATGAACAAAATTGACGACGATGTCTACTTCAAAACCGGATGGGAGAAATTCGCGCAAGATAATCTACTAGAATTCGGCGATTTCCTCATATTTTACTACCACGGCGGATCAAACTTCTACGTGAGCATATCCGGAATAAA...

CDS

Download CDS FASTA

417 bp · TkA03G031080|TK1151|CDS

ATGCCTGCGCATTGCTCTACGCAACTGCGAATACCACCTGCGTTTCTCAAGTACTTTGGGGATTCCTTACCCTTCAAGTTTACCCTTCAAACTTCTGCAACAAACTCATGGGAGGTACACATGAACAAAATTGACGACGATGTCTACTTCAAAACCGGATGGGAGAAATTCGCGCAAGATAATCTACTAGAATTCGGCGATTTCCTCATATTTTACTACCACGGCGGATCAAACTTCTACGTGAGCATATCCGGAATAAA...

Protein

Download Protein FASTA

138 aa · TkA03G031080|TK1151|PROTEIN

MPAHCSTQLRIPPAFLKYFGDSLPFKFTLQTSATNSWEVHMNKIDDDVYFKTGWEKFAQDNLLEFGDFLIFYYHGGSNFYVSISGINNCLKDINITNNNIQNQPTVTPLQNPKQRKQVTHTNKQPKGLKLKIAICHLK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G031080`
TK1151 ID	TkA03G031080
OH-1004 ID	LXL04_006368
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 79.710 / OH-1004 43.307 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G031080

Location Chr03:8347045-8347524 (-)

Description Similar to Os03g0212300: B3 domain-containing protein Os03g0212300

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66980`	Putative B3 domain-containing protein At5g66980.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006368 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G66980

dosa:Os03g0212300

dosa:Os03g0621600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.875

Rank 1 · TkA03G031080 · TK1151

Cytoplasm0.183

Rank 2 · TkA03G031080 · TK1151

Cell membrane0.035

Rank 3 · TkA03G031080 · TK1151

Endoplasmic reticulum0.027

Rank 4 · TkA03G031080 · TK1151

Extracellular0.025

Rank 5 · TkA03G031080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362B37-83 aa

PF02733Dak117-51 aa

PF02362B3106-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G031080	`PF02362`	B3	7	83	6.4e-17	62.1
TkA03G031080	`PF02733`	Dak1	17	51	0.27	10.8
TkA03G031080	`PF02362`	B3	106	125	6.4e-17	62.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FGD2`	Arabidopsis thaliana	sp\|Q9FGD2\|Y5698_ARATH Putative B3 domain-containing protein At5g66980	38.400%	Swiss-Prot	Medium

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