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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G030210
Reference: TK1151 Chr: Chr03 Coordinates: 8109444-8117007 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4689 bp · TkA03G030210|TK1151|cDNA

CCACACCGTCTGCCCCCCAATCTTGTACCACCGTTACGATACACGTTCTCTAGCATTAGTTTTTTAACCTTTTTTTGTCATATATTTTTAGGGCTTTTTTTTTTTGTTAACAAAAACCCACCATTTGGTTTCTCTCTCATCGCCTTCTTTCTCTCTCTACACACATCCAGGTCTTCTTGTTCGTTTTGGACCTGGTACATGCCCACTTTTTAGTTTACACCCATCTCCTCAAAATTAAAAAAAAAAGGCGTCCATTCGAT...

CDS

Download CDS FASTA

4038 bp · TkA03G030210|TK1151|CDS

ATGCAAGTGCTTCCCTGTAACGGCCCAGATCAGGGTTCTGAAAAGCCTTTTGTGTATGATGGAGGGTCAAACAATGTCAAACACGAACTAGCTGATGGAACTGGAATCGGAATCGGAATCACGGAAGCATCTGATGATGACCAAAAACTGTCTTCCAACACTCATGATTCCGGAGTTGATAGTCTGGAATTGGCAAGTGGGAATCAGGAATGTGAGTCTGAACCCAAATGGCTCGAACAAGATCAACCCATTGCTGTTTG...

Protein

Download Protein FASTA

1345 aa · TkA03G030210|TK1151|PROTEIN

MQVLPCNGPDQGSEKPFVYDGGSNNVKHELADGTGIGIGITEASDDDQKLSSNTHDSGVDSLELASGNQECESEPKWLEQDQPIAVWVKWRGKWQAGIRCARSDWPLSTIRAKPTHERKQYLVIFFPRKRNYSWADVLLLRPINEYPEPIAYRSHNIGVKIVKDLTVARRFIMQKIAVSMINTIEQLTTEALRETARSVVMWKEFALEASRCKDYTDLGNMLLKLEEMILQQFLDPFWLEHSKATWVQKCQNAQTSESIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G030210
TK1151 IDTkA03G030210
OH-1004 IDLXL04_000174
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)32.000
Protein coverage (%)TK1151 22.082 / OH-1004 33.675
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G030210
LocationChr03:8109444-8117007 (-)
DescriptionSimilar to SUVH1: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23740 Histone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis.
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.2012 · DOI: 10.1371/journal.pgen.1002995

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000174 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008361 regulation of cell size Biological Process
GO:0032259 methylation Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0048366 leaf development Biological Process
GO:0000775 chromosome, centromeric region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005694 chromosome Cellular Component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function
GO:0003690 double-stranded DNA binding Molecular Function
GO:0008168 methyltransferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0010385 double-stranded methylated DNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G17770
ath:AT1G73100
ath:AT2G24740
ath:AT5G04940
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955
Rank 1 · TkA03G030210 · TK1151
Cytoplasm0.080
Rank 2 · TkA03G030210 · TK1151
Cell membrane0.033
Rank 3 · TkA03G030210 · TK1151
Endoplasmic reticulum0.018
Rank 4 · TkA03G030210 · TK1151
Plastid0.016
Rank 5 · TkA03G030210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26734SUVR5_N81-162 aa
PF31066DUF8799221-257 aa
PF11722zf-TRM13_CCCH400-427 aa
PF18868zf-C2H2_3rep410-442 aa
PF08879WRC411-429 aa
PF23102Zf-C2H2_ZNF451_2nd422-437 aa
PF17123zf-RING_11451-463 aa
PF08879WRC459-475 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G030210PF26734SUVR5_N811625.9e-42142.3
TkA03G030210PF31066DUF87992212575.2e-0523.7
TkA03G030210PF11722zf-TRM13_CCCH4004274.17.8
TkA03G030210PF18868zf-C2H2_3rep4104424.4e-45154.1
TkA03G030210PF08879WRC4114299.26.8
TkA03G030210PF23102Zf-C2H2_ZNF451_2nd4224378.77.1
TkA03G030210PF17123zf-RING_114514632.38.7
TkA03G030210PF08879WRC4594759.26.8
TkA03G030210PF11722zf-TRM13_CCCH4604744.17.8
TkA03G030210PF08879WRC5455629.26.8
TkA03G030210PF23320Zn_SUZ126737016.87.2
TkA03G030210PF23107Zf-C2H2_ZNF451_C6756960.02815.7
TkA03G030210PF05605zf-Di196767340.004817.8
TkA03G030210PF12756zf-C2H2_26766990.006517.4
TkA03G030210PF17003Actin_micro6767030.08612.8
TkA03G030210PF13894zf-C2H2_46786988e-0833.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64827Arabidopsis thalianasp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR544.600%Swiss-ProtMedium

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