LXL04_000174 | RubberDandelionOmics

Gene overview

LXL04_000174

Reference: OH-1004 Chr: Chr01 Coordinates: 3619020-3622106 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2346 bp · LXL04_000174|LXL04_000174|OH1004|cDNA

ATGTTTACGGATCCGGCTAAAATCGAGGGATTCAGCTTTTGGAGATTGACTGGTTCAATTGTTTCCATCAACATTTCTGCCACAACTCACTCGCTCACACTCTCGTCAAGTGAACATAGTGGAGGAGGACAGTTTGCAACTAAAAATTGCGCTCTGAGTTTGCACATTTCGGCGTTATATGCGTTTGTAGCTGATAAAAATGGTGGCTCCGATGTTCTAAAGGTGCAAATTAGATTGATGGAAGACAATTTAGGTTCAGA...

CDS

Download CDS FASTA

2346 bp · LXL04_000174|LXL04_000174|OH1004|CDS

ATGTTTACGGATCCGGCTAAAATCGAGGGATTCAGCTTTTGGAGATTGACTGGTTCAATTGTTTCCATCAACATTTCTGCCACAACTCACTCGCTCACACTCTCGTCAAGTGAACATAGTGGAGGAGGACAGTTTGCAACTAAAAATTGCGCTCTGAGTTTGCACATTTCGGCGTTATATGCGTTTGTAGCTGATAAAAATGGTGGCTCCGATGTTCTAAAGGTGCAAATTAGATTGATGGAAGACAATTTAGGTTCAGA...

Protein

Download Protein FASTA

781 aa · LXL04_000174|LXL04_000174|OH1004|PROTEIN

MFTDPAKIEGFSFWRLTGSIVSINISATTHSLTLSSSEHSGGGQFATKNCALSLHISALYAFVADKNGGSDVLKVQIRLMEDNLGSDAVPSGPLDKNKVFAIKPLRCLVPIFPSGSGPSATQQSPFAFVAPTGPFPPGSAQFFPFVPPNESQRQPPTTTPAPDTTKSYAIPSPVPLNSFRTPTSAPPPDNGTKVTTTTTTRRSSKTLTPYDDVYTQTDNYENGFTIDTEDSGDAIKRKRKIRKTVKGSQAVAVSSSEVDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000174`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000174

Location Chr01:3619020-3622106 (-)

Description Similar to SUVH1: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73100`	Histone methyltransferase.	No verified direct reference in this release
`At5g04940`	Histone methyltransferase.	Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.2005 · DOI: 10.1038/sj.emboj.7600604
`At1g17770`	Histone methyltransferase.	No verified direct reference in this release
`At2g24740`	Histone methyltransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000174 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008361 regulation of cell size Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0048366 leaf development Biological Process

GO:0000775 chromosome, centromeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function

GO:0003690 double-stranded DNA binding Molecular Function

GO:0008168 methyltransferase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0010385 double-stranded methylated DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G17770

ath:AT1G73100

ath:AT2G24740

ath:AT5G04940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.872

Rank 1 · LXL04_000174 · OH-1004

Cytoplasm0.112

Rank 2 · LXL04_000174 · OH-1004

Cell membrane0.051

Rank 3 · LXL04_000174 · OH-1004

Endoplasmic reticulum0.032

Rank 4 · LXL04_000174 · OH-1004

Plastid0.030

Rank 5 · LXL04_000174 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02182.24SAD_SRA340-493 aa

PF05033.23Pre-SET523-618 aa

PF00856.34SET637-755 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000174	`PF02182.24`	SAD_SRA	340	493	1.3e-53	181.5
LXL04_000174	`PF05033.23`	Pre-SET	523	618	4.4e-19	69.6
LXL04_000174	`PF00856.34`	SET	637	755	1.6e-19	71.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5P4`	Arabidopsis thaliana	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3	45.793%	Swiss-Prot	moderate database homology
`Q9FF80`	Arabidopsis thaliana	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1	52.941%	Swiss-Prot	moderate database homology
`Q9C5P1`	Arabidopsis thaliana	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7	41.333%	Swiss-Prot	moderate database homology
`Q9C5P0`	Arabidopsis thaliana	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8	43.545%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card