Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2022 bp · TkA03G010320|TK1151|cDNA
ATGGATTCGTACTCGCTTAAGTGTGTCTCAGATCTACCTGATCCTTTCCGTGCAACTTTTAGTTTCAGGTATTTCAACTCGCTGCAGAGTGAATGCTTTTCAGCTTGTTTCCACTCCGACATCAACATGGTTATCTCAGCACCAACCGGCAGTGGGAAGACAGTGCTTTTTGAATTATCCATATTGCGGCTTCTATCTAAGTTCATCTCCCATGAAGGAAGATTTAATCATACGAAGGGAACTCTGAAAACAATATATAT...
3444 bp · TkA03G010320|TK1151|CDS
ATGGATTCGTACTCGCTTAAGTGTGTCTCAGATCTACCTGATCCTTTCCGTGCAACTTTTAGTTTCAGGTATTTCAACTCGCTGCAGAGTGAATGCTTTTCAGCTTGTTTCCACTCCGACATCAACATGGTTATCTCAGCACCAACCGGCAGTGGGAAGACAGTGCTTTTTGAATTATCCATATTGCGGCTTCTATCTAAGTTCATCTCCCATGAAGGAAGATTTAATCATACGAAGGGAACTCTGAAAACAATATATAT...
Protein
Download Protein FASTA1147 aa · TkA03G010320|TK1151|PROTEIN
MDSYSLKCVSDLPDPFRATFSFRYFNSLQSECFSACFHSDINMVISAPTGSGKTVLFELSILRLLSKFISHEGRFNHTKGTLKTIYISPSKALVQEKLRSWNQKLGSWGINCLELTGDNESYSIKNIQDADIVLTTPEKFDAVTRFGIKDGGLSFFSDISLVLIDEVHLLNDPRGAALEAIVSRIKMIGRSPQMEKTPLAHVRFLAVSATIPNIDDLAEWLMVPVQGIKRFGEEMRPVKLTTKVFGYTPAKNDFLFEKRL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G010320 |
|---|---|
| TK1151 ID | TkA03G010320 |
| OH-1004 ID | LXL04_006114 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 92.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G010320 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:2569330-2583415 (+) | ||||||||||||
| Description | Similar to MER3: DExH-box ATP-dependent RNA helicase DExH17 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000712 resolution of meiotic recombination intermediates Biological Process GO:0007131 reciprocal meiotic recombination Biological Process GO:0007283 spermatogenesis Biological Process GO:0051026 chiasma assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0003678 DNA helicase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT3G27730 dosa:Os02g0617500 hsa:164045 mmu:330149 xtr:779837 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00270DEAD27-216 aaPF04851ResIII38-181 aaPF13401AAA_2243-183 aaPF00271Helicase_C78-119 aaPF00271Helicase_C264-318 aaPF00270DEAD272-295 aaPF00271Helicase_C334-413 aaPF11731Cdd1428-458 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G010320 | PF00270 | DEAD | 27 | 216 | 4.9e-29 | 101.9 |
| TkA03G010320 | PF04851 | ResIII | 38 | 181 | 1.8e-07 | 31.9 |
| TkA03G010320 | PF13401 | AAA_22 | 43 | 183 | 0.21 | 12.6 |
| TkA03G010320 | PF00271 | Helicase_C | 78 | 119 | 1.2e-12 | 48.8 |
| TkA03G010320 | PF00271 | Helicase_C | 264 | 318 | 1.2e-12 | 48.8 |
| TkA03G010320 | PF00270 | DEAD | 272 | 295 | 4.9e-29 | 101.9 |
| TkA03G010320 | PF00271 | Helicase_C | 334 | 413 | 1.2e-12 | 48.8 |
| TkA03G010320 | PF11731 | Cdd1 | 428 | 458 | 0.0043 | 17.9 |
| TkA03G010320 | PF23445 | WHD_SNRNP200 | 445 | 523 | 1e-11 | 45.5 |
| TkA03G010320 | PF00271 | Helicase_C | 475 | 494 | 1.2e-12 | 48.8 |
| TkA03G010320 | PF31084 | SDH_memb_Act | 478 | 566 | 0.13 | 12.5 |
| TkA03G010320 | PF02889 | Sec63 | 534 | 849 | 2.8e-41 | 142.2 |
| TkA03G010320 | PF11731 | Cdd1 | 692 | 726 | 0.0043 | 17.9 |
| TkA03G010320 | PF14520 | HHH_5 | 693 | 732 | 0.0091 | 17.2 |
| TkA03G010320 | PF29713 | HHH_RS2-RL21-YNQ2 | 694 | 739 | 0.0027 | 18.8 |
| TkA03G010320 | PF13401 | AAA_22 | 762 | 780 | 0.21 | 12.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.