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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G006370
Reference: TK1151 Chr: Chr03 Coordinates: 1556374-1559270 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1305 bp · TkA03G006370|TK1151|cDNA

ATGTATTCGTTAATTCAATCTTCTTCTGATCTTAATTTCAAAGTCGTCATCATCGGAGACTCGGCGGTCGGCAAATCGAACCTGCTCTCTAGGTACGCTAGGAATGAGTTCAATATGCACTCTAAAGCCACCATCGGAGTCGAATTTCAGACGCAGACCATGGAGATCGACGACAAGGAGGTTAAGGCTAATTCGGCTTTAAATTCGGAGACGAGTGAGCATGTTGCGATTAAGAAGATTGCCAACGCCTTCGATAATAA...

CDS

Download CDS FASTA

1305 bp · TkA03G006370|TK1151|CDS

ATGTATTCGTTAATTCAATCTTCTTCTGATCTTAATTTCAAAGTCGTCATCATCGGAGACTCGGCGGTCGGCAAATCGAACCTGCTCTCTAGGTACGCTAGGAATGAGTTCAATATGCACTCTAAAGCCACCATCGGAGTCGAATTTCAGACGCAGACCATGGAGATCGACGACAAGGAGGTTAAGGCTAATTCGGCTTTAAATTCGGAGACGAGTGAGCATGTTGCGATTAAGAAGATTGCCAACGCCTTCGATAATAA...

Protein

Download Protein FASTA

434 aa · TkA03G006370|TK1151|PROTEIN

MYSLIQSSSDLNFKVVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQTMEIDDKEVKANSALNSETSEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHVNVSDSFGYNSWEDVGWVKLELRCPQRVHGIVADPQVDWSFDELISELNAVDQKLQTSSLVPLPFTKTHSSDLSVVGRAEKNRKPFVMHVSDDDDDDDDDEKNSRQVGMTGRFACDDIYLSDDEDSDSESDSDTGAQLSLMDKGGVIEGALIELS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G006370
TK1151 IDTkA03G006370
OH-1004 IDLXL04_005228
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G006370
LocationChr03:1556374-1559270 (-)
DescriptionSimilar to RABA5D: Ras-related protein RABA5d
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g31680 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g05810 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At2g43130 Intracellular vesicle trafficking and protein transport.
In vitro mutation analysis of Arabidopsis thaliana small GTP-binding proteins and detection of GAP-like activities in plant cells.1994 · DOI: 10.1016/0014-5793(94)80696-9

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005228 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0006887 exocytosis Biological Process
GO:0006914 autophagy Biological Process
GO:0009408 response to heat Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0034498 early endosome to Golgi transport Biological Process
GO:0048219 inter-Golgi cisterna vesicle-mediated transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
KEGG gene cross-reference
ath:AT1G05810
ath:AT2G31680
ath:AT2G43130
sce:YER031C
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.454
Rank 1 · TkA03G006370 · TK1151
Nucleus0.428
Rank 2 · TkA03G006370 · TK1151
Cell membrane0.092
Rank 3 · TkA03G006370 · TK1151
Mitochondrion0.068
Rank 4 · TkA03G006370 · TK1151
Endoplasmic reticulum0.058
Rank 5 · TkA03G006370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00735Septin11-63 aa
PF00071Ras14-63 aa
PF08477Roc14-60 aa
PF01926MMR_HSR114-61 aa
PF00350Dynamin_N15-92 aa
PF13191AAA_1615-34 aa
PF12519MDM1025-88 aa
PF03938OmpH47-83 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G006370PF00735Septin11630.899.5
TkA03G006370PF00071Ras14635.2e-1452.8
TkA03G006370PF08477Roc14605.5e-1143.5
TkA03G006370PF01926MMR_HSR114610.008616.9
TkA03G006370PF00350Dynamin_N15920.3711.5
TkA03G006370PF13191AAA_1615340.611.3
TkA03G006370PF12519MDM1025882.57.6
TkA03G006370PF03938OmpH47830.8710.5
TkA03G006370PF14235DUF433751902.88.7
TkA03G006370PF00069Pkinase641158.9e-0522.7
TkA03G006370PF13191AAA_161802030.611.3
TkA03G006370PF01926MMR_HSR12402700.008616.9
TkA03G006370PF22770POP1_C2423330.1912.7
TkA03G006370PF14235DUF43372683392.88.7
TkA03G006370PF03938OmpH2743640.8710.5
TkA03G006370PF13191AAA_162923380.611.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIP0Arabidopsis thalianasp|Q9SIP0|RAA5D_ARATH Ras-related protein RABA5d90.200%Swiss-ProtLow
P19892Arabidopsis thalianasp|P19892|RAA5E_ARATH Ras-related protein RABA5e84.300%Swiss-ProtLow
P28187Arabidopsis thalianasp|P28187|RAA5C_ARATH Ras-related protein RABA5c86.300%Swiss-ProtLow

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