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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G603740
Reference: TK1151 Chr: Chr02 Coordinates: 155670785-155671108 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

324 bp · TkA02G603740|TK1151|cDNA

ATGTTAGACCCAGTCAAATCGAAACACATGAAGGCAGATAGCAAAATCGGAACAACTCTATACCTGATGTTAGACCCAGTCAAATCGGAACACATGAAGGCAGATAGCAAAATCGGAACAACCTCACCTCCAGCGGCTACCGGATTTCCCCAGATTCTGCAGACCTCTTCTTCCCAACATTTCCCTCTCATCTCTCTCAAGGAAATCAGAATCCATCCACCTGCTTCATCCCTTCTCGCCGACGTGAGCTTCTACAGTCG...

CDS

Download CDS FASTA

324 bp · TkA02G603740|TK1151|CDS

ATGTTAGACCCAGTCAAATCGAAACACATGAAGGCAGATAGCAAAATCGGAACAACTCTATACCTGATGTTAGACCCAGTCAAATCGGAACACATGAAGGCAGATAGCAAAATCGGAACAACCTCACCTCCAGCGGCTACCGGATTTCCCCAGATTCTGCAGACCTCTTCTTCCCAACATTTCCCTCTCATCTCTCTCAAGGAAATCAGAATCCATCCACCTGCTTCATCCCTTCTCGCCGACGTGAGCTTCTACAGTCG...

Protein

Download Protein FASTA

107 aa · TkA02G603740|TK1151|PROTEIN

MLDPVKSKHMKADSKIGTTLYLMLDPVKSEHMKADSKIGTTSPPAATGFPQILQTSSSQHFPLISLKEIRIHPPASSLLADVSFYSRRSRRNSPRRRRRYHRIAFER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G603740
TK1151 IDTkA02G603740
OH-1004 IDLXL04_020949
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.100
Protein coverage (%)TK1151 97.196 / OH-1004 13.506
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G603740
LocationChr02:155670785-155671108 (+)
DescriptionSimilar to At1g50920: Nucleolar GTP-binding protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020949 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0008156 negative regulation of DNA replication Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0010972 negative regulation of G2/M transition of mitotic cell cycle Biological Process
GO:0022408 negative regulation of cell-cell adhesion Biological Process
GO:0030336 negative regulation of cell migration Biological Process
GO:0031397 negative regulation of protein ubiquitination Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0050821 protein stabilization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G50920
hsa:23560
mmu:69237
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.451
Rank 1 · TkA02G603740 · TK1151
Cytoplasm0.400
Rank 2 · TkA02G603740 · TK1151
Cell membrane0.113
Rank 3 · TkA02G603740 · TK1151
Mitochondrion0.096
Rank 4 · TkA02G603740 · TK1151
Endoplasmic reticulum0.071
Rank 5 · TkA02G603740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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