TkA02G592720 | RubberDandelionOmics

Gene overview

TkA02G592720

Reference: TK1151 Chr: Chr02 Coordinates: 152922634-152923967 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

852 bp · TkA02G592720|TK1151|cDNA

AGGTGAACTGTTGCCAAAACAGTGGCAAATGGCAATTACATCCCGTATCCTCGTATAACGGTACCGGTACAAGCTTCAGAAAAGAGTTCAGGCAGAGAGGTTCGAATAGTTCATCGAGAAAAGTTTAGCAACAATGGGGAAAGATCTGAGCGACGATCAAGTTTCTTCTATGAAAGAAGCCTTTACGCTTTTTGACACCGACGGCGACGGAAAGATTGCACCATCGGAGCTCGGAATCCTTATGCGTTCCCTCGGCGGAA...

CDS

Download CDS FASTA

444 bp · TkA02G592720|TK1151|CDS

ATGGGGAAAGATCTGAGCGACGATCAAGTTTCTTCTATGAAAGAAGCCTTTACGCTTTTTGACACCGACGGCGACGGAAAGATTGCACCATCGGAGCTCGGAATCCTTATGCGTTCCCTCGGCGGAAACCCTACCCAAGCTCAACTAAAGACTATAATCGCTGAAGAAAAACTCACATCTCCCTTCGATTTCAAACGTTTCCTTGAGTTAATGTCGAAACATCTCAAACCTGAGCCCTTCGATCGCCAGCTCCGTGATGC...

Protein

Download Protein FASTA

147 aa · TkA02G592720|TK1151|PROTEIN

MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKTIIAEEKLTSPFDFKRFLELMSKHLKPEPFDRQLRDAFKVIDKDATGYVVVADLKHILTSIGEKLEPAEFDEWIREVDVGSDGKIKYEDFIARMVAK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G592720`
TK1151 ID	TkA02G592720
OH-1004 ID	LXL04_012015
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 92.517 / OH-1004 91.892 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G592720

Location Chr02:152922634-152923967 (-)

Description Similar to CML13: Probable calcium-binding protein CML13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12310`	Potential calcium sensor.	No verified direct reference in this release
`At1g62820`	Potential calcium sensor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0117400`	Potential calcium sensor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012015 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019722 calcium-mediated signaling Biological Process

GO:0071548 response to dexamethasone Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0016460 myosin II complex Cellular Component

GO:0005509 calcium ion binding Molecular Function

GO:0030234 enzyme regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G12310

ath:AT1G62820

ath:AT5G21274

dosa:Os08g0117400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.719

Rank 1 · TkA02G592720 · TK1151

Nucleus0.228

Rank 2 · TkA02G592720 · TK1151

Cell membrane0.109

Rank 3 · TkA02G592720 · TK1151

Endoplasmic reticulum0.072

Rank 4 · TkA02G592720 · TK1151

Lysosome / Vacuole0.054

Rank 5 · TkA02G592720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13833EF-hand_85-29 aa

PF25825SAPC2_N5-32 aa

PF21008AIF-17-71 aa

PF25530EF-hand_SWAP70_N7-41 aa

PF05042Caleosin11-57 aa

PF23564EF-hand_FSTL111-38 aa

PF13499EF-hand_712-55 aa

PF13405EF-hand_613-41 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G592720	`PF13833`	EF-hand_8	5	29	1.4e-11	44.7
TkA02G592720	`PF25825`	SAPC2_N	5	32	2e-06	28.3
TkA02G592720	`PF21008`	AIF-1	7	71	1e-07	33.0
TkA02G592720	`PF25530`	EF-hand_SWAP70_N	7	41	0.068	13.9
TkA02G592720	`PF05042`	Caleosin	11	57	0.016	15.9
TkA02G592720	`PF23564`	EF-hand_FSTL1	11	38	0.016	16.3
TkA02G592720	`PF13499`	EF-hand_7	12	55	1e-24	87.3
TkA02G592720	`PF13405`	EF-hand_6	13	41	6.9e-18	63.3
TkA02G592720	`PF00036`	EF-hand_1	13	40	9.8e-16	56.8
TkA02G592720	`PF13202`	EF-hand_5	14	35	5.6e-08	32.6
TkA02G592720	`PF14658`	EF-hand_9	15	54	9.6e-10	39.5
TkA02G592720	`PF29176`	Allatotropin-like_C	20	39	0.074	13.4
TkA02G592720	`PF30551`	CFAP251_C	25	127	8.3e-07	29.6
TkA02G592720	`PF13405`	EF-hand_6	63	69	6.9e-18	63.3
TkA02G592720	`PF23564`	EF-hand_FSTL1	63	78	0.016	16.3
TkA02G592720	`PF00036`	EF-hand_1	64	69	9.8e-16	56.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94AZ4`	Arabidopsis thaliana	sp\|Q94AZ4\|CML13_ARATH Probable calcium-binding protein CML13	87.200%	Swiss-Prot	High
`Q8VZ50`	Arabidopsis thaliana	sp\|Q8VZ50\|CML14_ARATH Probable calcium-binding protein CML14	83.100%	Swiss-Prot	High
`Q84VG0`	Oryza sativa subsp. japonica	sp\|Q84VG0\|CML7_ORYSJ Probable calcium-binding protein CML7	76.700%	Swiss-Prot	High

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