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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G592450
Reference: TK1151 Chr: Chr02 Coordinates: 152854983-152860210 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3830 bp · TkA02G592450|TK1151|cDNA

GTTCTTACAAAGTTTGTAATTTTAATACTCCATGTATTATAGAAATTAGGAACACACTCAACATGGGAATAAACCCCTATTTTATCATGCAATTCATTTTATGCTTCCCGCGAAAATCTCTCGACTCTGTATCTTCTAAAACCTTCCCCCAAATCGAACGAAATTTGATCCAATAAAACCTAGAAATCAACATCATCATCTCTTTTGACAATTTATTCTCTCTTAATGCTAAAATTTACACTCACATAAAGCAGTGAACA...

CDS

Download CDS FASTA

3339 bp · TkA02G592450|TK1151|CDS

ATGTCTGAAACGAGAGATAACAACGTCGGAGGTGGATGCGACGACGACATCAAAGGTAATGAAGATCGTGATCGGAAAACGAGCGAAATTGATATACTCGACGCTTCATCTCTAGGCCTAAATCGCATTCGCAGTCGCTCCTCCGCTTCTCATCGTAACAATGATTCTACTGCTGGCACAGCCTCAAAATTGGGTGCCTATGATGTCGACAAGATCTCAAATCCTCCCGGAGCCAAAGTGGACACAACGCAACAACCTCC...

Protein

Download Protein FASTA

1112 aa · TkA02G592450|TK1151|PROTEIN

MSETRDNNVGGGCDDDIKGNEDRDRKTSEIDILDASSLGLNRIRSRSSASHRNNDSTAGTASKLGAYDVDKISNPPGAKVDTTQQPPKADPGKKVSWGQSKSLQVQLLSDTGMEGSNSAFAKEMQSPRFQAIMRVTSGRKKKVPDIKSFSHELNSEGVRPFPLWKPRAYGHVEEIMVMLRGKFEKLKEEVNADLGIYAGDLVGILEQTPKSHPEWKEVLEDLLITASKCAKMTSNEFWLKCESIVQSLDDRRQELPMGIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G592450
TK1151 IDTkA02G592450
OH-1004 IDLXL04_012018
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 96.853 / OH-1004 83.166
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G592450
LocationChr02:152854983-152860210 (-)
DescriptionSimilar to IRE: Probable serine/threonine protein kinase IRE
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g62310 Modulates root tip growth. No verified direct reference in this release
At3g17850 May be involved in root hair elongation. No verified direct reference in this release
At1g48490 Probable serine/threonine protein kinase IRE3. No verified direct reference in this release
At1g45160 Probable serine/threonine protein kinase IRE4. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012018 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007010 cytoskeleton organization Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0015630 microtubule cytoskeleton Cellular Component
GO:0035618 root hair Cellular Component
GO:0000287 magnesium ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G45160
ath:AT1G48490
ath:AT3G17850
ath:AT5G62310
xla:447257
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592
Rank 1 · TkA02G592450 · TK1151
Nucleus0.282
Rank 2 · TkA02G592450 · TK1151
Cell membrane0.177
Rank 3 · TkA02G592450 · TK1151
Golgi apparatus0.080
Rank 4 · TkA02G592450 · TK1151
Lysosome / Vacuole0.066
Rank 5 · TkA02G592450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01636APH131-193 aa
PF26031IREH1164-282 aa
PF25757TPR_DNAAF5172-248 aa
PF05445Pox_ser-thr_kin210-243 aa
PF26031IREH1577-602 aa
PF01636APH586-641 aa
PF00069Pkinase695-987 aa
PF07714PK_Tyr_Ser-Thr696-843 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G592450PF01636APH1311930.01316.0
TkA02G592450PF26031IREH11642821.2e-54184.5
TkA02G592450PF25757TPR_DNAAF51722480.09512.6
TkA02G592450PF05445Pox_ser-thr_kin2102430.03513.8
TkA02G592450PF26031IREH15776021.2e-54184.5
TkA02G592450PF01636APH5866410.01316.0
TkA02G592450PF00069Pkinase6959872.7e-62211.3
TkA02G592450PF07714PK_Tyr_Ser-Thr6968433e-30106.1
TkA02G592450PF03109ABC16997280.0001821.5
TkA02G592450PF14531Kinase-like7007300.006916.4
TkA02G592450PF01636APH7358120.01316.0
TkA02G592450PF03109ABC17698410.0001821.5
TkA02G592450PF14531Kinase-like7938380.006916.4
TkA02G592450PF05445Pox_ser-thr_kin8068280.03513.8
TkA02G592450PF01636APH8108430.01316.0
TkA02G592450PF07714PK_Tyr_Ser-Thr8919723e-30106.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LE81Arabidopsis thalianasp|Q9LE81|IRE_ARATH Probable serine/threonine protein kinase IRE58.500%Swiss-ProtHigh
F4J6F6Arabidopsis thalianasp|F4J6F6|IREH1_ARATH Probable serine/threonine protein kinase IREH153.400%Swiss-ProtHigh
F4HYG2Arabidopsis thalianasp|F4HYG2|IRE3_ARATH Probable serine/threonine protein kinase IRE347.000%Swiss-ProtMedium
F4HPN2Arabidopsis thalianasp|F4HPN2|IRE4_ARATH Probable serine/threonine protein kinase IRE442.900%Swiss-ProtMedium

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