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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G592170
Reference: TK1151 Chr: Chr02 Coordinates: 152792340-152796875 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2929 bp · TkA02G592170|TK1151|cDNA

AAAAGATCCCACAAAGTTGAACCACCCAACGATTCCTTGTTCCGAGACAGTAGACAGCTGCACATGGCGCGGAAGGTGCTCGGCGTAATGTCTATGTGAAATTGATTCCGATTACGTTAACATTTTGCTTCGATCGTGAAAGCGGGCATAGAGAAACAAGCGTGGGAGACATATATAAAGCTGTTTTTAAGATCGAGAGATGTTGAAACGAGTCAGTTCACTGTCAACATTTATTTCGGCGGCTAAACCATCTCTGCTTA...

CDS

Download CDS FASTA

1530 bp · TkA02G592170|TK1151|CDS

ATGGCGGTTAGTATGCAGTGTCAAATCCTCAACGCATTTTCTTTGAAAAAAAATGCAAACAACAAAAAATATCAAAATAAGGAGCTCTCGTTACCCAATTCATCTCCAACAAAACTTCTTGTACACCAAAAGCCATACCCACAAACTAAACTTCAAGCACTTGCAAACGTTGTTGATGACCTCGAAGCTTCCGTCAAAAACGGCATAAGGATCGATGACCCCAGTATGTTTTCTTCGCTTCTCGAAACTTGCTTTCGTTT...

Protein

Download Protein FASTA

509 aa · TkA02G592170|TK1151|PROTEIN

MAVSMQCQILNAFSLKKNANNKKYQNKELSLPNSSPTKLLVHQKPYPQTKLQALANVVDDLEASVKNGIRIDDPSMFSSLLETCFRLEAVEQGIRIHRLIPTTLVRRNVGVSSKLLRLYASNGFIEEAHQVFDYMSDRNSSAFAWISLISGYSELGLYEDALALYFQMVEEGVDPDEYTFPRVLKACGGMGLIHVGQQVHREIIRCGYGNNGFVLNGLVDMYAKCGDIVKARKVFDKIPSKDLVSWNSMLRGYVKHELLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G592170
TK1151 IDTkA02G592170
OH-1004 IDLXL04_012024
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G592170
LocationChr02:152792340-152796875 (-)
DescriptionSimilar to PCMP-E53: Pentatricopeptide repeat-containing protein At4g25270, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g25270 Pentatricopeptide repeat-containing protein At4g25270, chloroplastic. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At5g50390 Pentatricopeptide repeat-containing protein At5g50390, chloroplastic. No verified direct reference in this release
At3g15130 Putative pentatricopeptide repeat-containing protein At3g15130. No verified direct reference in this release
At5g39350 Pentatricopeptide repeat-containing protein At5g39350. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012024 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0031426 polycistronic mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT3G46790
ath:AT4G25270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.477
Rank 1 · TkA02G592170 · TK1151
Plastid0.378
Rank 2 · TkA02G592170 · TK1151
Nucleus0.051
Rank 3 · TkA02G592170 · TK1151
Cytoplasm0.032
Rank 4 · TkA02G592170 · TK1151
Cell membrane0.006
Rank 5 · TkA02G592170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12554MOZART152-61 aa
PF13812PPR_367-86 aa
PF23276TPR_2477-165 aa
PF09202Rio2_N85-112 aa
PF17177PPR_long88-191 aa
PF22330Rib_mS39_PPR95-139 aa
PF14559TPR_19110-133 aa
PF13041PPR_2114-139 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G592170PF12554MOZART152610.1412.7
TkA02G592170PF13812PPR_367864.7e-1865.8
TkA02G592170PF23276TPR_24771654.7e-0627.3
TkA02G592170PF09202Rio2_N851120.1613.0
TkA02G592170PF17177PPR_long881914e-0627.1
TkA02G592170PF22330Rib_mS39_PPR951390.05813.9
TkA02G592170PF14559TPR_191101330.03915.0
TkA02G592170PF13041PPR_21141392e-40137.4
TkA02G592170PF13812PPR_31141364.7e-1865.8
TkA02G592170PF01535PPR1151394.8e-42140.0
TkA02G592170PF13428TPR_141151334e-0524.6
TkA02G592170PF12854PPR_11191361.3e-1557.5
TkA02G592170PF20431E_motif1261731.6e-1145.0
TkA02G592170PF14559TPR_191261760.03915.0
TkA02G592170PF13041PPR_21421872e-40137.4
TkA02G592170PF00515TPR_11431670.1912.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SB36Arabidopsis thalianasp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270, chloroplastic59.500%Swiss-ProtHigh
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic35.800%Swiss-ProtMedium
Q9FK33Arabidopsis thalianasp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390, chloroplastic31.600%Swiss-ProtMedium
P0C898Arabidopsis thalianasp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g1513033.100%Swiss-ProtMedium
Q9FLZ9Arabidopsis thalianasp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g3935034.200%Swiss-ProtMedium

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