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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G590090
Reference: TK1151 Chr: Chr02 Coordinates: 152263978-152267294 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3152 bp · TkA02G590090|TK1151|cDNA

CTCAAGAGCATGGGCTAAATCTCTTGGGCCACCCGGAAGACTTTAAGCCCCATTTATGAGACCCGTTTTAATCAACTATCAACACCTACACCGCCAATCCCATCCGTATCAGACACCATATCACGAAAGATCTCAGGTGCATCACTCGATCTGTACTTCTGTAATCTTTCTTCACGGCTCTCTCTGGTAATCCCACCTCCTGCGCCCTCGACGTTGAAGAATCTTATGGAGACTCTAGAGGTGAACCATGTTGATCATAA...

CDS

Download CDS FASTA

2118 bp · TkA02G590090|TK1151|CDS

ATGGAGACTCTAGAGGTGAACCATGTTGATCATAATCATTCGTCTCTGCAATCGATAAATACTTCACAATCTGAAACCCTAGTTTCCTCCCGTGACCTGCAAAATTCTGAATCAATTAACCATAATCAGGGCCAAGGTGCTGATTCTTATAACAAGTTTCAACATGTGGAAACCGTAACTTCTGGTCAACAAAATCAAAATACGGTCTCGGAGCCTGCGAACGGGCAGGCGGTTGGTAGCTCCTCCAAGAATCCATTAAT...

Protein

Download Protein FASTA

705 aa · TkA02G590090|TK1151|PROTEIN

METLEVNHVDHNHSSLQSINTSQSETLVSSRDLQNSESINHNQGQGADSYNKFQHVETVTSGQQNQNTVSEPANGQAVGSSSKNPLIKIIHKPLLSENVLTNNTNSGTDKDCSGGEEETTSRRRRKSRWDPPPSEDGGTASDGSGATGTRKRKSRWADDEPKPIIQLPDFMKDFAAGFDFDPEVQALNSRLLEISRKFQSGLPLDDRPEGARSPSPEPIYDNLGIRINTREYRARERLNKERQEIISQIIKKNPSFKPPA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G590090
TK1151 IDTkA02G590090
OH-1004 IDLXL04_012055
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G590090
LocationChr02:152263978-152267294 (+)
DescriptionSimilar to SF1: Splicing factor-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g51300 Necessary for the splicing of pre-mRNA.
A homolog of splicing factor SF1 is essential for development and is involved in the alternative splicing of pre-mRNA in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12491

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012055 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008380 RNA splicing Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0045292 mRNA cis splicing, via spliceosome Biological Process
GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process
GO:0000243 commitment complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016607 nuclear speck Cellular Component
KEGG gene cross-reference
afm:AFUA_3G10840
ath:AT5G51300
cnb:CNBD3480
cne:CND02880
ncr:NCU04110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.648
Rank 1 · TkA02G590090 · TK1151
Cytoplasm0.447
Rank 2 · TkA02G590090 · TK1151
Cell membrane0.039
Rank 3 · TkA02G590090 · TK1151
Mitochondrion0.033
Rank 4 · TkA02G590090 · TK1151
Endoplasmic reticulum0.027
Rank 5 · TkA02G590090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30463Tuftelin_like10-30 aa
PF16275SF1-HH152-263 aa
PF22675KH-I_KHDC4-BBP277-358 aa
PF00013KH_1283-312 aa
PF22891KH_PNO1_2nd284-311 aa
PF23469KH_12291-359 aa
PF30463Tuftelin_like319-384 aa
PF27939DUF8363386-437 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G590090PF30463Tuftelin_like10301.38.8
TkA02G590090PF16275SF1-HH1522631e-2694.3
TkA02G590090PF22675KH-I_KHDC4-BBP2773581.3e-2383.3
TkA02G590090PF00013KH_12833121.7e-0525.2
TkA02G590090PF22891KH_PNO1_2nd2843110.1213.0
TkA02G590090PF23469KH_122913590.0003221.6
TkA02G590090PF30463Tuftelin_like3193841.38.8
TkA02G590090PF27939DUF83633864370.2511.9
TkA02G590090PF29534Salivary_glue3864071.59.6
TkA02G590090PF16866PHD_43874400.02915.0
TkA02G590090PF00098zf-CCHC3884040.003718.0
TkA02G590090PF13917zf-CCHC_33884060.3611.4
TkA02G590090PF13696zf-CCHC_23893980.3811.3
TkA02G590090PF29534Salivary_glue4104361.59.6
TkA02G590090PF13917zf-CCHC_34124290.3611.4
TkA02G590090PF13696zf-CCHC_24144230.3811.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LU44Arabidopsis thalianasp|Q9LU44|SF1_ARATH Splicing factor-like protein 161.500%Swiss-ProtHigh

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