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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G579160
Reference: TK1151 Chr: Chr02 Coordinates: 149409031-149411144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1210 bp · TkA02G579160|TK1151|cDNA

TATCTCTTCTTCTCTAAAATCACTTGATCTTAGTTGGACCGGTTTGCAAGGGAAATTACCTACTAACATGTTCAGTCTTCCATACATGGAAAAACTTGACTTGTCAAACAATTGGTACGTAACTGGTCCATTGCCCATTGTTAACAAGAGTATTAACATCCCTCTCAAATGGTTGGGTCTCTCATCCACCAATCTATCAGGAGAAACATTGGGCTCAATTGGCCATCTCACATCCTTGAAATATTTGGATCTATCATCTT...

CDS

Download CDS FASTA

1209 bp · TkA02G579160|TK1151|CDS

ATCTCTTCTTCTCTAAAATCACTTGATCTTAGTTGGACCGGTTTGCAAGGGAAATTACCTACTAACATGTTCAGTCTTCCATACATGGAAAAACTTGACTTGTCAAACAATTGGTACGTAACTGGTCCATTGCCCATTGTTAACAAGAGTATTAACATCCCTCTCAAATGGTTGGGTCTCTCATCCACCAATCTATCAGGAGAAACATTGGGCTCAATTGGCCATCTCACATCCTTGAAATATTTGGATCTATCATCTTG...

Protein

Download Protein FASTA

402 aa · TkA02G579160|TK1151|PROTEIN

ISSSLKSLDLSWTGLQGKLPTNMFSLPYMEKLDLSNNWYVTGPLPIVNKSINIPLKWLGLSSTNLSGETLGSIGHLTSLKYLDLSSCSLWGAFPKSLFNLTHLTTLNVEGNMLNGTLPSLLFTLPGLQVIVLKSNNFHGPIETSSMIKFPFQNLRVLDLSHNEFTGQLPRKYFQHFNAMKDVVRTTDSRPTYFEFNGKYYSVIVGVKGHQLPFPQLMVDYMIIDLSSNRFQGDIPDIICTLNSLIVLNISHNNLNGRIPH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G579160
TK1151 IDTkA02G579160
OH-1004 IDLXL04_012240
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)91.600
Protein coverage (%)TK1151 62.687 / OH-1004 18.754
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G579160
LocationChr02:149409031-149411144 (+)
DescriptionSimilar to 9DC3: Receptor-like protein 9DC3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g40170 Receptor-like protein 54. No verified direct reference in this release
At2g32660 Receptor like protein 22. No verified direct reference in this release
At3g05650 Receptor-like protein 32. No verified direct reference in this release
At1g71390 Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. No verified direct reference in this release
At1g71400 Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Functional analyses of the CLAVATA2-like proteins and their domains that contribute to CLAVATA2 specificity.2010 · DOI: 10.1104/pp.109.148197

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012240 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002238 response to molecule of fungal origin Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ag:AAA65235
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.884
Rank 1 · TkA02G579160 · TK1151
Endoplasmic reticulum0.086
Rank 2 · TkA02G579160 · TK1151
Cytoplasm0.056
Rank 3 · TkA02G579160 · TK1151
Nucleus0.041
Rank 4 · TkA02G579160 · TK1151
Lysosome / Vacuole0.021
Rank 5 · TkA02G579160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13516LRR_63-17 aa
PF23952LRR_EndoS3-37 aa
PF00560LRR_14-25 aa
PF13855LRR_84-37 aa
PF12799LRR_44-37 aa
PF23598LRR_144-39 aa
PF25013LRR_Zer-14-18 aa
PF25019LRR_R13L1-DRL214-35 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G579160PF13516LRR_63176e-1142.3
TkA02G579160PF23952LRR_EndoS3371.89.5
TkA02G579160PF00560LRR_14255.3e-2994.7
TkA02G579160PF13855LRR_84375.2e-2381.3
TkA02G579160PF12799LRR_44375e-1762.2
TkA02G579160PF23598LRR_144394.7e-1452.6
TkA02G579160PF25013LRR_Zer-14182.6e-0525.1
TkA02G579160PF25019LRR_R13L1-DRL214350.003318.1
TkA02G579160PF24758LRR_At5g5637015700.05513.8
TkA02G579160PF25013LRR_Zer-1251012.6e-0525.1
TkA02G579160PF23286LRR_13261100.02615.0
TkA02G579160PF13516LRR_627406e-1142.3
TkA02G579160PF00560LRR_130415.3e-2994.7
TkA02G579160PF29594LRR_SKP2301080.003417.4
TkA02G579160PF29247LRR_MHP1-HER1-GIP351990.1511.9
TkA02G579160PF00560LRR_155765.3e-2994.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4KHA2Arabidopsis thalianasp|F4KHA2|RLP54_ARATH Receptor-like protein 5449.400%Swiss-ProtMedium
O48851Arabidopsis thalianasp|O48851|RLP22_ARATH Receptor like protein 2249.600%Swiss-ProtMedium
Q9M9X0Arabidopsis thalianasp|Q9M9X0|RLP32_ARATH Receptor-like protein 3237.800%Swiss-ProtLow
Q9C9H6Arabidopsis thalianasp|Q9C9H6|RLP11_ARATH Receptor-like protein 1147.000%Swiss-ProtMedium
Q9C9H7Arabidopsis thalianasp|Q9C9H7|RLP12_ARATH Receptor-like protein 1233.600%Swiss-ProtLow

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