TkA02G561410 | RubberDandelionOmics

Gene overview

TkA02G561410

Reference: TK1151 Chr: Chr02 Coordinates: 145015703-145016461 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

506 bp · TkA02G561410|TK1151|cDNA

AGATGCCTATGAGAAGAAGCCAAAAGCTAGCTGACAAAATTACAGCCCTTCAAAAGCTTGTGTCTCCTTACGGCAAGACTGACACGGCGTCTGTGCTTCAAGAAGCTCATATATCTATCAATCTCCTTCACCACAAGATTCAGGGGTTGTTCCAGAAAACAGAGACTTCAACCAACAACCTTGGAGCAGTACAATTTCAGAATAATGAGGCAGTAAAAACTGGGATACACGATAGAGGCCTATGTTTGGTTCCCACGTCA...

CDS

Download CDS FASTA

315 bp · TkA02G561410|TK1151|CDS

ATGCCTATGAGAAGAAGCCAAAAGCTAGCTGACAAAATTACAGCCCTTCAAAAGCTTGTGTCTCCTTACGGCAAGACTGACACGGCGTCTGTGCTTCAAGAAGCTCATATATCTATCAATCTCCTTCACCACAAGATTCAGGGGTTGTTCCAGAAAACAGAGACTTCAACCAACAACCTTGGAGCAGTACAATTTCAGAATAATGAGGCAGTAAAAACTGGGATACACGATAGAGGCCTATGTTTGGTTCCCACGTCAGA...

Protein

Download Protein FASTA

104 aa · TkA02G561410|TK1151|PROTEIN

MPMRRSQKLADKITALQKLVSPYGKTDTASVLQEAHISINLLHHKIQGLFQKTETSTNNLGAVQFQNNEAVKTGIHDRGLCLVPTSDPRINSLCFWNHNFMPRN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G561410`
TK1151 ID	TkA02G561410
OH-1004 ID	LXL04_012437
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 46.429 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G561410

Location Chr02:145015703-145016461 (+)

Description Similar to BHLH154: Transcription factor bHLH154

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20640`	Transcription factor bHLH123.	No verified direct reference in this release
`At4g05170`	Transcription factor bHLH114.	No verified direct reference in this release
`At1g61660`	Transcription factor bHLH112.	No verified direct reference in this release
`At1g27660`	Transcription factor bHLH110.	No verified direct reference in this release
`At2g31730`	Transcription factor bHLH154.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012437 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0005634 nucleus Cellular Component

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G27660

ath:AT2G31730

ath:AT3G19500

ath:AT3G20640

ath:AT4G05170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.860

Rank 1 · TkA02G561410 · TK1151

Cytoplasm0.270

Rank 2 · TkA02G561410 · TK1151

Mitochondrion0.023

Rank 3 · TkA02G561410 · TK1151

Cell membrane0.020

Rank 4 · TkA02G561410 · TK1151

Endoplasmic reticulum0.014

Rank 5 · TkA02G561410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010HLH3-41 aa

PF23177bHLH_IRO34-69 aa

PF14523Syntaxin_27-68 aa

PF12199efb-c8-45 aa

PF12199efb-c49-55 aa

PF27761VUP_C78-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G561410	`PF00010`	HLH	3	41	0.045	14.3
TkA02G561410	`PF23177`	bHLH_IRO3	4	69	0.036	15.1
TkA02G561410	`PF14523`	Syntaxin_2	7	68	0.078	13.7
TkA02G561410	`PF12199`	efb-c	8	45	0.045	14.5
TkA02G561410	`PF12199`	efb-c	49	55	0.045	14.5
TkA02G561410	`PF27761`	VUP_C	78	86	0.011	15.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GXT3`	Arabidopsis thaliana	sp\|Q8GXT3\|BH123_ARATH Transcription factor bHLH123	37.100%	Swiss-Prot	Medium
`Q9M0X8`	Arabidopsis thaliana	sp\|Q9M0X8\|BH114_ARATH Transcription factor bHLH114	37.100%	Swiss-Prot	Medium
`Q94JL3`	Arabidopsis thaliana	sp\|Q94JL3\|BH112_ARATH Transcription factor bHLH112	39.600%	Swiss-Prot	Medium
`Q9SFZ3`	Arabidopsis thaliana	sp\|Q9SFZ3\|BH110_ARATH Transcription factor bHLH110	42.700%	Swiss-Prot	Medium
`Q7XJU1`	Arabidopsis thaliana	sp\|Q7XJU1\|BH154_ARATH Transcription factor bHLH154	42.900%	Swiss-Prot	Medium

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